Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14992 140 8e-28 >seq14992 Length=4940 Score = 140 bits (154), Expect = 8e-28 Identities = 154/199 (77%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCG 177990 |||||||| || ||||| || || |||||||| |||||||| || ||| ||||||| | Sbjct 4940 GTGAAAACCCTGACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTGACACCATTG 4883 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||||||||| ||||| |||||||| ||||| || || || || ||||| | || | Sbjct 4882 AGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGAGGCTGA 4823 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAA 178109 ||||||| || || ||||| || ||||| | || |||| |||| || ||| |||| || Sbjct 4822 TCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCAC-CTTGTCCGACTACAACATCCAGAAG 4764 Query 178110 GAATCAACACTGCATCTTG 178128 ||||| || ||||| |||| Sbjct 4763 GAATCCACCCTGCA-CTTG 4746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202452294658062