Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Podiceps_20cristatus_20[genbank_20GCA_5F000699545.1_202014-06-11] 82,923 sequences; 1,134,922,578 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14992 116 3e-21 >seq14992 Length=4940 Score = 116 bits (128), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| ||||| ||| |||||||| ||||| |||||||| | ||||||| Sbjct 4735 AGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGC 4794 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| || || | ||||| || ||| Sbjct 4795 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 4854 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || ||||| || | ||||||||||| Sbjct 4855 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 4910 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || || || || || ||||| || || || Sbjct 4911 GGTGATGGTCTTGCCTGTCAGGGTTTTCAC 4940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461824804567600