Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq58 136 3e-27 seq2 89.7 4e-13 >seq58 Length=3607375 Score = 136 bits (150), Expect = 3e-27 Identities = 96/110 (87%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| |||| |||||||||| |||||||||| |||||||||||||| Sbjct 3019889 CTTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGG 3019830 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||||| |||||||||| ||| Sbjct 3019829 AATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCTG 3019780 >seq2 Length=63311091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| ||||||||||| || || |||||||| ||||| | ||| || | Sbjct 46423108 CTTTGTATTCTGCTCCAAAATGCCTCCATTGGAAACCATACACTGGTCCCAAATCACCCT 46423049 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | || ||||| |||||||||| Sbjct 46423048 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAA 46422989 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||| ||| Sbjct 46422988 TCTTCACACCTTTTGCAGAAAGCTCCTTG 46422960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361227398738906