Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq32 84.2 3e-11 >seq2 Length=63311091 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| | ||| | ||| | Sbjct 19108487 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 19108428 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 19108427 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 19108368 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 19108367 CAACCACTCTCTCACC 19108352 >seq32 Length=7345140 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || || || || | || || || || ||||| | Sbjct 6862980 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 6863039 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 6863040 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 6863099 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | || ||||| | || || || | |||| | || ||||||| Sbjct 6863100 TCTGGGAGATCTCCCACACTGTCTTGTAGAGCTGCTTCAGGTCATCTGGAA 6863150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593681479262880