Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-25 seq55 104 3e-17 >seq13 Length=17247568 Score = 131 bits (144), Expect = 2e-25 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | ||||||||||||||||||||| | ||||||||||| Sbjct 13998258 GGGCACGCCGTCGGGGCCAATGAGGAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCG 13998317 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 13998318 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 13998377 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACC 83296 ||||| |||||| ||||| | |||||| || || | |||| ||||| ||| Sbjct 13998378 GAAGGGCAGCGCCTCTTTCAGGAAAGTGAAGAGAGGGTGCTCGTCCTT--CCCGTTCACC 13998435 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||||| | || || || |||| ||| ||||| |||||||| |||| || Sbjct 13998436 TCGCACTTCTCGAACATGATGAAATTTGGCTTGAACCCGTTGCCAGGACGAACGTACT 13998493 >seq55 Length=4085542 Score = 104 bits (114), Expect = 3e-17 Identities = 122/163 (75%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 3272264 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGG--GGTA 3272321 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 3272322 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGAAG 3272380 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAA 83550 | || |||||||| || | || |||||||| || | ||| || Sbjct 3272381 CCACATTCTCGATCAGGACCACGCGGCCCCGGAAAACGCCAAA 3272423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608755660556240