Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21 140 3e-28 seq12 129 6e-25 seq27 125 7e-24 seq98 84.2 2e-11 >seq21 Length=13582449 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || |||||||| ||||||||| | || ||||| Sbjct 1694625 GAAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGC 1694684 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||||| || || | || || || |||||||| | | Sbjct 1694685 CCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTG 1694744 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | || ||||| |||| Sbjct 1694745 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACT 1694804 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| || |||| ||||| || || ||||| || |||| || Sbjct 1694805 ACAACATCCAGAAAGAATCCACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1694856 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 1694857 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1694916 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | || || || |||||||| | |||| Sbjct 1694917 TGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACC 1694975 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || || | ||| ||||| |||||||| || | || ||||| ||||||| Sbjct 1694976 AGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACA 1695035 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||||||| ||| ||||| | || || || Sbjct 1695036 ACATCCAGAAGGAATCTACCCTGCATCTTGTGCTGCGCCTCAGAGGTGG 1695084 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || ||||| ||| Sbjct 1695086 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1695145 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || || |||||||| | ||||| Sbjct 1695146 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1695204 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | || ||||| |||||||| Sbjct 1695205 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1695264 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | || ||||| || || |||| || |||| || Sbjct 1695265 CATTCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGTCTGCGGGGTGG 1695312 >seq12 Length=17335395 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| || |||||||| || |||| || Sbjct 8987961 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAT 8987902 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 8987901 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 8987848 >seq27 Length=10010218 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 3545253 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 3545194 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||| ||| | || Sbjct 3545193 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGA 3545135 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || ||||| ||||| || || | ||||||||| ||||| Sbjct 3545134 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTA 3545075 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| |||||||| |||| || || || ||| ||||| ||||||| || Sbjct 3545074 CAACATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTGAGGGGAGG 3545024 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 3545023 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 3544964 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| || || | || || || ||||| || | ||||| Sbjct 3544963 TGACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCA 3544904 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| ||||| ||||| || || | ||||||||| |||||||| Sbjct 3544903 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAA 3544844 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||||||| |||| || || || ||| ||||| | ||||| || Sbjct 3544843 CATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTCAGGGGTGG 3544796 Score = 105 bits (116), Expect = 7e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || ||| ||| Sbjct 3544794 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 3544735 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||| ||| | ||||| Sbjct 3544734 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 3544676 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| |||| ||||||||| ||||||||| Sbjct 3544675 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 3544616 Query 40869 CATCCAG 40875 ||| ||| Sbjct 3544615 CATTCAG 3544609 >seq98 Length=1773073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| |||||| || |||||||| || | ||| Sbjct 1267826 GGGATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGC 1267885 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 1267886 ACCCTCGCAGACTACAACATCCAGAA 1267911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184384062560