Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq27 111 1e-19 seq21 89.7 4e-13 seq25 82.4 7e-11 >seq27 Length=10010218 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || ||||||||||| || || |||||| ||| Sbjct 3545038 CAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATC 3545097 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || ||||| |||| || | |||||| || || || ||||| ||||| || Sbjct 3545098 TTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3545157 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 3545158 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 3545217 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 3545218 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3545251 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || || || ||||||||||| || || |||||| ||| Sbjct 3544810 CAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATC 3544869 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || |||||| | || || | |||||| || ||||| ||||| ||||| || Sbjct 3544870 TTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATC 3544929 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | ||| | ||||| || |||||| || | ||| | || Sbjct 3544930 CTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 3544989 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 3544990 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3545022 >seq21 Length=13582449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || || || ||| || ||||| || ||| Sbjct 1695282 GTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCA 1695223 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || ||||| ||||| ||||| || || || || Sbjct 1695222 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 1695163 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || |||||| || | || | || ||||| ||||| || Sbjct 1695162 ACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 1695103 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 1695102 TTGACAAAGATCTGCAT 1695086 >seq25 Length=11054343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| ||| || ||||| |||||| ||||| || ||||| ||| Sbjct 9608266 CTTTTTGAATGTTGTAGTCGGACAGTGTGCGTCCATCCTCCAGCTGCTTCCCAGCAAAGA 9608325 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | || ||||||||||| ||||| ||||| Sbjct 9608326 TCAGCCGCTGCTGATCCGGAGGGATGCC 9608353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801816812952