Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq21 118 7e-22 seq27 114 8e-21 >seq21 Length=13582449 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||| || ||||| | ||| ||||||||| ||||||||||| || Sbjct 1694857 TCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGA 1694798 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| |||| | || |||| ||||||||| || || || |||| ||||||||| || Sbjct 1694797 CAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 1694738 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | || | || | || | | ||||| Sbjct 1694737 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 1694678 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||| ||||||||||| Sbjct 1694677 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1694630 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| || || | ||| ||| ||||| ||||||||||| ||||| |||| | || Sbjct 1695070 CAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1695011 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| |||||||| |||| ||||||||| || | || ||||| || Sbjct 1695010 TTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1694951 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | ||||| || | |||||||| Sbjct 1694950 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1694891 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 1694890 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1694858 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || ||||| | ||| || ||||| ||||||||||| ||| Sbjct 1695312 CCACCCCGCAGACGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 1695253 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||| ||||||||| || || || |||| ||||||||| || Sbjct 1695252 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1695193 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | || | | ||||| Sbjct 1695192 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACT 1695133 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || ||||| || || || || ||||||||||||||| Sbjct 1695132 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATC 1695085 >seq27 Length=10010218 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | ||| ||| ||||| ||||||||||| ||||| || | || Sbjct 3544810 CAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATC 3544869 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| |||||||| |||| ||||||||| || | || ||||| || Sbjct 3544870 TTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATC 3544929 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | ||||| |||| |||||||| Sbjct 3544930 CTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATGGT 3544989 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 3544990 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3545022 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | |||||||||||| | ||| ||| ||||| ||||||||||| || Sbjct 3545023 TCCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGA 3545082 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | ||||||||| || || || |||| ||||||||| ||| Sbjct 3545083 CAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 3545142 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | || | || | | || || Sbjct 3545143 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAAC 3545202 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 3545203 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3545250 Score = 89.7 bits (98), Expect = 3e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 34204 CTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAG 34263 ||| ||||||||||||||||| || |||| |||| |||||| || || || || || Sbjct 3544609 CTGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAG 3544668 Query 34264 CCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTAT 34323 || ||||||||| ||| | || ||||| || ||||| ||| | | | || Sbjct 3544669 CCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAAT 3544728 Query 34324 CGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGAT 34383 | || | | ||| || || | |||||||| ||||| || || || ||||| ||||| Sbjct 3544729 GGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGAT 3544788 Query 34384 CTGCATC 34390 ||||||| Sbjct 3544789 CTGCATC 3544795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050714199360