Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq11 235 6e-57 >seq11 Length=20308778 Score = 235 bits (260), Expect = 6e-57 Identities = 311/435 (71%), Gaps = 3/435 (1%) Strand=Plus/Minus Query 125079 GCCGCTCATGCCCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCC 125138 ||||||| ||||||| || ||| ||||||||||||||| || || ||||||||| Sbjct 8355004 GCCGCTC---CCCGCCCCGTCCCCGCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCC 8354948 Query 125139 CTGCTCTTCGGCCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACA 125198 |||| ||||||||||| |||||||| ||||||| || || ||||| || | || Sbjct 8354947 GCGCTCCTCGGCCAGGTAGGCGGCCAGGTGGGCGGCCAGGCAGCGCGGCCCGTCGCCGCA 8354888 Query 125199 GCCGTTTTCGTACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCG 125258 ||| ||| |||||| | ||||||| |||| ||| || | | |||||| || Sbjct 8354887 GCCCCGCTCGGCCAGCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCG 8354828 Query 125259 ACCCCAGTTGAAGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAA 125318 |||||||||| ||||| | | | || | | | |||| ||| |||| || Sbjct 8354827 GCCCCAGTTGAGGCCGCCGTCAGCCTCCAGCTGCGCCGCCACCCTTCCCAGCAGCGCGGC 8354768 Query 125319 CGCTGCCTGCGTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCG 125378 ||| || ||| || | | ||| | ||||||||||||||| |||||||||| ||| | Sbjct 8354767 CGCCTCCCGCGGCTCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTG 8354708 Query 125379 CCGCTCCAGCTCGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCC 125438 ||||||||||||||||||||| ||||| || || || || ||| || | Sbjct 8354707 CCGCTCCAGCTCGGCCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCGC 8354648 Query 125439 TTCCTTGCCGCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAG 125498 | ||||| || |||||||||||||||||||||||||| |||||| || |||||||| Sbjct 8354647 GGCGCCGCCGCCGCGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAG 8354588 Query 125499 GGAGTCAGCCATGGC 125513 ||| | |||||| Sbjct 8354587 AGAGCGCGGCATGGC 8354573 Score = 226 bits (250), Expect = 3e-54 Identities = 309/435 (71%), Gaps = 3/435 (1%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | ||| |||||||| || |||||| |||||||||||||||||||||||||| Sbjct 8354573 GCCATGCCGCGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 8354632 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || ||||| | | || ||| || || || |||||||| | ||||||||| || Sbjct 8354633 CGCGGCGGCGGCGCCGCGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 8354692 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||||| ||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 8354693 GCCGAGCTGGAGCGGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 8354752 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| || |||| ||| |||| | | | || | | | || Sbjct 8354753 GAGCCGCGGGAGGCGGCCGCGCTGCTGGGAAGGGTGGCGGCGCAGCTGGAGGCTGACGGC 8354812 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | | || ||| |||| ||||||| | ||| Sbjct 8354813 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCGCG 8354872 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| ||||| | || ||||| || || ||||||| |||||||| ||| Sbjct 8354873 CTGGCCGAGCGGGGCTGCGGCGACGGGCCGCGCTGCCTGGCCGCCCACCTGGCCGCCTAC 8354932 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| ||||||||| || || ||||||||||||||| ||| || || Sbjct 8354933 CTGGCCGAGGAGCGCGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGCGGGGACGGG 8354992 Query 157503 GCGGGCATGAGCGGC 157517 ||||| ||||||| Sbjct 8354993 GCGGG---GAGCGGC 8355004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509149591891200