Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq11 405 4e-108 >seq11 Length=20308778 Score = 405 bits (448), Expect = 4e-108 Identities = 760/1110 (68%), Gaps = 18/1110 (2%) Strand=Plus/Minus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || ||||||||| |||| | |||| | || | Sbjct 4855618 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCAGAAAGCCATCCGGGAGGCGCAGCTCAA 4855559 Query 107582 CAACCTGGAAGTGAAGAA---AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACAT 107638 |||||| |||||| ||| |||| || || | ||| | ||||| ||||| Sbjct 4855558 CAACCTCGAAGTGGCGAACAGAAAGGCTTCACCGACGCCCGGCG---AATACCTGAACAT 4855502 Query 107639 AACCAGAGACTGT-GAGCGCTTCAAG--GCCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 || || ||||| |||| ||||||| | || || | ||| |||| || || || Sbjct 4855501 TACGAGGGACTGCAGAGC-CTTCAAGAAGACCC--GGCGCTACATCGAGTTTCCCCTCAG 4855445 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 | || ||| || |||||||| |||||||| ||||| |||| | || || || | Sbjct 4855444 CCAGGAGGAGAAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGACAT 4855385 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||| ||||| ||||| |||| || |||| ||||| | ||||||||||| ||||| Sbjct 4855384 GTTTGAGCGGCTCCTGCGGTCCGTCTACTCCCCCCAGAATGTCTACTGTGTCCATGTGGA 4855325 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 || ||||| | | ||| | ||||| || ||||||| | ||||||||||||| Sbjct 4855324 CAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATTGCTGCCTGCTTCCCCAA 4855265 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| ||||||| ||| ||||| |||||| |||||||| | |||| || Sbjct 4855264 CGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCCGCCTGGTCCCGGCTGCAGGC 4855205 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 ||||| ||||| ||| | ||| |||| |||||| | ||||| ||| ||| | | || Sbjct 4855204 CGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGGCGATACCTCATCAA 4855145 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || ||||| || ||||||||||| |||||||||| |||||| |||| ||| || || | Sbjct 4855144 CACTTGCGGCACCGACTTCCCCATCAAGACCAATGGCGAGATAGTCCGGGCGCTGCAGCT 4855085 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTG 108115 | || |||| | |||| ||||||| ||| || || | |||| | | ||||| Sbjct 4855084 GCTGCAGGGCCATAACAACGTGGAGTCGGAGAAGCCCTCAGCCGCCAAGCAGCAGCGCTG 4855025 Query 108116 GAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCC 108175 | | |||| | | |||||| || || | | | || | ||| ||| || || Sbjct 4855024 GCAGTACCACCACGAGGTGGGGGAGACCATCTCTCGCACTGCCCAGAAGAAACTGCCGCC 4854965 Query 108176 CCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGT 108235 || | | | ||||||||||| || | || || | || | | || | |||||| Sbjct 4854964 GCCCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCGGTCACACGGGACTTTGT 4854905 Query 108236 CCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTA 108295 || | ||||| || ||||| | | |||| | | || ||| ||| |||| ||| Sbjct 4854904 GCAGTACGTCTTCGAGAACCCCACGGCACAAAAGTTCCTCGAGTGGTCCAAGGACAGCTA 4854845 Query 108296 TAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCTC 108352 ||||||||||| ||| ||||||||||||| | || ||| | |||| ||| | Sbjct 4854844 CAGCCCCGACGAGCACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCAC 4854785 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 | || ||| | ||||| || |||| ||||||| ||| | || | || ||||| Sbjct 4854784 TCCCCCCAGCGA---CAAGTTCCAGCTCTCGGACATGAACGCCCTTCCCCGCCTGGTCAA 4854728 Query 108413 GTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAAT 108472 |||| |||||| ||||| || |||||| ||| ||| | || | |||||| | || Sbjct 4854727 GTGGGAGTACCTGGAGGGGGACATCAGCAAGGGCGCGGCCTACCCGCCCTGCACCGGCCG 4854668 Query 108473 CCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCA 108532 ||| | | | ||||||||||| ||||||| || ||| || |||||| || ||| | || Sbjct 4854667 CCACCAGCGCGCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGCA 4854608 Query 108533 TCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGA 108592 || |||||||| |||||||| ||||| |||||| ||| | ||| ||||| | || Sbjct 4854607 CCATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCCTCCAGTGTCTCGA 4854548 Query 108593 AGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||| |||| || || |||||| | || || Sbjct 4854547 GGAGCACCTGCGCCACAAGGCCCTGTACGG 4854518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348245854092444