Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq27 113 4e-20 seq21 100 2e-16 >seq27 Length=10010218 Score = 113 bits (124), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||||||||||| ||| ||| | || || Sbjct 3545042 ACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCG 3545101 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | || ||||| ||| Sbjct 3545102 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 3545161 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 3545162 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 3545221 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG-CCT-CAATACACACAGATGT 45359 || ||||| |||||||||||||| ||||||||| ||| ||| ||| | || ||| Sbjct 3545222 CCAGTCAGGGTCTTCACAAAGATCTGCATGTTGACCTGCAAGACAAAGAGGTGT 3545275 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 45151 CTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAA 45210 |||||||||||||||| ||| ||| |||| ||||| || || || || || |||| Sbjct 3544609 CTGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAG 3544668 Query 45211 CCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC 45270 || ||| ||||| || || | || ||||| ||| || || ||| || | | | Sbjct 3544669 CCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAAT 3544728 Query 45271 GCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGAT 45330 | |||| | |||||||| | || || |||||||| ||||| |||||||| ||||| Sbjct 3544729 GGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGAT 3544788 Query 45331 TTGCAT 45336 ||||| Sbjct 3544789 CTGCAT 3544794 >seq21 Length=13582449 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| || ||||| ||||||||||| ||| || | || ||||| || Sbjct 1694833 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTG 1694774 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| || ||| ||||| ||||| | || ||||| ||| || || Sbjct 1694773 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTT 1694714 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| ||||| | ||| || ||||||||||| Sbjct 1694713 GGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGT 1694654 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 ||| |||||||| ||||| ||||| || || Sbjct 1694653 CAGGGTCTTCACGAAGATCTGCATTTTTCC 1694624 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||||||||||||||| ||| || | || ||||| || Sbjct 1695289 GTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTG 1695230 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| || ||| ||||| ||||| | || ||||| ||| || || Sbjct 1695229 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTT 1695170 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| || |||| || || |||||||| || Sbjct 1695169 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCAGT 1695110 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| |||||||| ||||| Sbjct 1695109 CAGGGTCTTGACAAAGATCTGCAT 1695086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| || | || ||||| || || || ||||| Sbjct 1695048 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAA 1694989 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| ||||| | || ||||| ||| || || ||| || | Sbjct 1694988 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 1694929 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| ||||| ||||| ||| Sbjct 1694928 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 1694869 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 1694868 AAGATCTGCAT 1694858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395049170223526