Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq2 111 2e-19 >seq12 Length=17335395 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || ||||| || ||||| || | ||| ||||| ||||||| ||| | Sbjct 8985318 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8985377 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| |||| || || || || || ||||| || || || ||||| ||||| | Sbjct 8985378 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAGG 8985437 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 8985438 CTACTACACGTTCTCC 8985453 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 13913 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 ||||||||| | ||| |||||| || |||||||| | || |||||||| || ||||| Sbjct 8987017 TCTCTTTAGAATCCTT--AATGTAGGTGTCAATAAGGAGACTGTACATTTCTGAATGTAT 8987074 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||| || || ||||| || ||||||||||| | |||||||| |||||| || Sbjct 8987075 ATTTTCCATGGCAATCTGGAAGCCATAAAAACAACGAGCTTCTGTGATTTGTACTTC 8987131 >seq2 Length=63311091 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || || || || ||||| |||||||| || | || | Sbjct 19108487 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 19108428 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || |||||||| || || || ||||||||||| | Sbjct 19108427 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 19108368 Query 13802 C 13802 | Sbjct 19108367 C 19108367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478556459361840