Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq21 159 8e-34 seq4 154 3e-32 seq2 113 1e-19 seq12 98.7 2e-15 seq116 91.5 3e-13 >seq21 Length=13582449 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || ||||||||||| || || |||||| Sbjct 1694859 ATTCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCA 1694800 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || |||||| Sbjct 1694799 GACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 1694740 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 1694739 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 1694680 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || || || ||||||||||| Sbjct 1694679 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 1694627 >seq4 Length=50704236 Score = 154 bits (170), Expect = 3e-32 Identities = 132/163 (81%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| | ||||||||||| || || | ||||| | ||||||||| Sbjct 9237188 GCTTTATGGTGGTATTATGTTTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 9237129 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 9237128 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 9237069 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| ||||| || ||| | ||||| ||||||| Sbjct 9237068 ACCTTGTGGTGGATTGGTATCAAGTGGGTTGCAGGTGGACAAG 9237026 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78782 CAATTTCATATAGCTATAGGACATACTGCTATGTCTATCTATATAGATTGTCCTTATCCA 78841 || || ||| | |||| || || || || ||||||| ||||| |||||||||| || Sbjct 9234131 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 9234072 Query 78842 CGATGGGTGCAATGGGCTGTAATTATATACGCGGTTACTTTTATTATTTTGTTCGGTAAC 78901 |||| |||| |||| ||| ||| | || || || || || ||| | ||||||||||| Sbjct 9234071 AAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTCGGTAAC 9234012 Query 78902 TTTTACTTCCGTACATATAAG 78922 || |||| || ||||||||| Sbjct 9234011 TTCTACTATCGGACATATAAG 9233991 >seq2 Length=63311091 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 19108364 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 19108423 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||| | ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 19108424 CTGAAGAAGAGGGGCTTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 19108483 Query 269258 GA 269259 || Sbjct 19108484 GA 19108485 >seq12 Length=17335395 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || ||||| || || |||||||| Sbjct 8985453 GGAGAACGTGTAGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCTTTTGCA 8985394 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 8985393 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 8985334 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 8985333 ATCAGTAGAGATGA 8985320 Score = 93.3 bits (102), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | |||||||| || | Sbjct 8987154 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTTTATGGCT 8987095 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 8987094 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTCCTTATTGACACCTACA 8987035 Query 269016 T 269016 | Sbjct 8987034 T 8987034 >seq116 Length=1055857 Score = 91.5 bits (100), Expect = 3e-13 Identities = 179/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||||| ||| |||||| | |||||| |||||| Sbjct 591648 CAGTGAATACTCCACACGGATTATACTACAATCAAGGATTGAAGGAGAAACTGGTGGAAT 591589 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG----GAAGTAGTTGCTTTCCAC 174188 ||||| |||||| |||||| |||| | || |||| ||| | || | |||| Sbjct 591588 TTTCAACTGTTTGCCATTCCAGGTTTCTGTTTTGCCAGATGACAAGGA-TTCC---CCAC 591533 Query 174189 GC-GATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGT 174247 || ||| || || || | | | |||| ||| || || | | | |||||||| |||| Sbjct 591532 GCAGAT-TGGCAACGAGCTGTTTGACTTCCTTCATTTTCCCTTTGGCATAAAATGCCTGT 591474 Query 174248 ATTTGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCA 174307 ||||||| || | || |||| || |||| || || || ||||| || ||| Sbjct 591473 GTTTGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCA 591414 Query 174308 ACTATCCTAACGTATTCACC 174327 | ||| || ||||||| Sbjct 591413 AAGATCTGAATTGATTCACC 591394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151318649109448