Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq93 167 3e-36 seq56 118 2e-21 >seq93 Length=1890510 Score = 167 bits (184), Expect = 3e-36 Identities = 215/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 1179424 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 1179483 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| |||| ||||| | || |||||||||||||| |||||||| | |||| Sbjct 1179484 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 1179543 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| || || || ||||| || || ||||||| || | ||| Sbjct 1179544 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 1179603 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 1179604 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1179663 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || ||||| || || || || || || || || || || |||||||||| Sbjct 1179664 TGGCATCAATGTCCCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 1179720 >seq56 Length=3924218 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || ||||||||||||||||| | |||| Sbjct 1646030 TCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCCAGTACTCTGGGG 1646089 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1646090 AGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCGATCTCCACCATGC 1646149 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| |||||| |||| || || | || || || | ||| ||||||| Sbjct 1646150 TTTCCCCAAAAATGCTGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCA 1646209 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || |||||||| || || | ||||| || || |||| | |||||||| Sbjct 1646210 GAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCTGT 1646267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708476921436640