Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq27 131 2e-25 seq21 107 2e-18 >seq27 Length=10010218 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| |||| |||| ||||| ||| | ||| |||||||| || | ||| || || Sbjct 3545020 CATTCCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTC 3545079 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || ||| ||| || ||||| || || ||||||| | || ||||| ||||| Sbjct 3545080 TGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGG 3545139 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| || || | || || ||||| ||| ||| |||||| | | || Sbjct 3545140 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTC 3545199 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||| |||||||| || ||||| || || |||||||||||||||||| Sbjct 3545200 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3545251 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | ||| |||||||| || | ||| || || || ||| | Sbjct 3544808 CGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCA 3544867 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | || ||||| ||||||||||| ||||| || Sbjct 3544868 TCTTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTA 3544927 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | ||||||| | | ||||| || | |||||| Sbjct 3544928 TCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATG 3544987 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || |||||||||||||| Sbjct 3544988 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3545022 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| ||||| ||||| ||||| || Sbjct 3544640 TCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTA 3544699 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | |||||| | | || || |||| |||||| Sbjct 3544700 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCCACCTCAAGAGTGATG 3544759 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 3544760 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3544794 >seq21 Length=13582449 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| ||| | |||| ||||||||||| || | ||| || || | Sbjct 1695084 CCACCTCTGAGGCGCAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1695025 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||||||| || || | || || | || ||||| || ||||| Sbjct 1695024 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGG 1694965 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||||||| | | |||||| | | ||||| Sbjct 1694964 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 1694905 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| || || || |||||||||||||| Sbjct 1694904 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1694858 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || | || |||| || | ||||| ||| ||||| || || | ||| || || Sbjct 1694860 CATTCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1694801 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || || | ||| |||||||| || || ||||||| | || ||||| || || Sbjct 1694800 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 1694741 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| || ||||| || || | || || |||||||| ||| |||||| | | || Sbjct 1694740 AGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 1694681 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||| |||||||| || || || || || ||||| ||||||||||| Sbjct 1694680 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1694630 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||||| ||| || ||||| || | ||| || || || || | | Sbjct 1695300 CGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCA 1695241 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || ||||| || Sbjct 1695240 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 1695181 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | |||||| | | ||||| || | ||||| Sbjct 1695180 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATA 1695121 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || |||||||||||||| Sbjct 1695120 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260906722160