Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 132 8e-27 seq39 127 3e-25 >seq6 Length=32995986 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 32921348 CGCCAAGCGGCACCGCAAAGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 32921407 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 32921408 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 32921467 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 32921468 GCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 32921527 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | ||||| || || Sbjct 32921528 GCACGCCAAGAGGAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTCAAACGCCAGGG 32921587 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 32921588 CCGCACTCTGTACGGCTTTGG 32921608 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || ||||||||||| || ||||||||||| || | Sbjct 32971004 CGCCAAGCGGCACCGCA-AGGTGTTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCA 32971062 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 32971063 TCCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 32971122 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 32971123 CGCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 32971182 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | || || || | || || || | Sbjct 32971183 AGCACGCCAAGAGGAAGACGGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 32971242 Query 16671 GCCG 16674 |||| Sbjct 32971243 GCCG 32971246 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | | || || ||||||||||| || ||||||||||| || | Sbjct 32973460 CGCCAAGCGGCACCGCA-AGGTGTTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCA 32973518 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || | ||||||| |||| Sbjct 32973519 TCCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTATGAGGAGA 32973578 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 32973579 CGCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 32973638 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| || ||| ||||||| | || || || | || || || | Sbjct 32973639 AGCACGCCAAGAGGAAGACGGTTACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 32973698 Query 16671 GCCG 16674 |||| Sbjct 32973699 GCCG 32973702 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 32923010 CTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 32922951 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | ||| | ||| Sbjct 32922950 GGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 32922891 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || || ||| || |||||||| || | ||||| ||| Sbjct 32922890 CTGGAGAACGTGATCCGTGACGCCGTCACCTACACGGAGCACGCCAAGAGGAAGACGGTC 32922831 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | | || || ||||| Sbjct 32922830 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACTCTGTACGGCTTTGG 32922772 Score = 123 bits (136), Expect = 4e-24 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| || |||||||| || || || Sbjct 32950592 CGTGATAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGCGGC 32950533 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| || | |||| || |||| || | || | ||| | ||||| Sbjct 32950532 GTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTCCTG 32950473 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| || |||||||| || | ||||| |||||| Sbjct 32950472 GAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGAGGAAGACGGTCACC 32950413 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| | || || || | || || || ||||| Sbjct 32950412 GCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGGCCG 32950375 >seq39 Length=6290538 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 6286973 CGCCAAGCGGCACCGCAAAGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 6287032 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 6287033 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 6287092 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 6287093 GCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 6287152 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || || || || Sbjct 6287153 GCACGCCAAGAGGAAGACGGTCACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 6287212 Query 16672 CCG 16674 ||| Sbjct 6287213 CCG 6287215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070257256358