Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq27 105 5e-18 seq21 100 2e-16 >seq27 Length=10010218 Score = 105 bits (116), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || ||||| ||||| || ||||||||||| | || ||| | || Sbjct 3544810 CAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATC 3544869 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | || ||||| || |||| |||| ||| ||||| ||| | ||| || || || Sbjct 3544870 TTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATC 3544929 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | |||||| | |||||| ||||| ||||||| Sbjct 3544930 CTGGATCTTGGC--CTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATG 3544987 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || |||||||| ||||||||| Sbjct 3544988 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 3545023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| || || ||||| ||||| || ||||||||||| | | Sbjct 3545024 CCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGAC 3545083 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || || | || ||||| ||| | || |||| ||| ||||| || Sbjct 3545084 AGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3545143 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | |||||| Sbjct 3545144 ATGCCTTCCTTATCCTGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCAA 3545201 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || ||||| || || ||||| |||||||| ||| Sbjct 3545202 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 3545254 >seq21 Length=13582449 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| || | |||||| || || ||||| || ||||||||||| | Sbjct 1695085 CCCACCTCTGAGGCGCAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGA 1695026 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | || |||| || ||||| || |||| |||| ||| ||||| ||| Sbjct 1695025 CAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGG 1694966 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || || || ||| || | | | ||||| | |||||| Sbjct 1694965 GATGCCTTCCTTATCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCG 1694908 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| || |||||||| ||||||||| Sbjct 1694907 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 1694857 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| || |||||||| || ||||||||||| | | Sbjct 1695312 CCACCCCGCAGACGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 1695253 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 1695252 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1695193 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || ||| || | | | ||||| | |||||| Sbjct 1695192 ATGCCTTCCTTATCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCGA 1695135 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| || || || ||||| || |||||||| |||||||| Sbjct 1695134 CTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| ||||| || || || ||||||||||| | | Sbjct 1694856 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1694797 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 1694796 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1694737 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || ||| || | | | ||||| | |||||| Sbjct 1694736 ATGCCTTCCTTATCCTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGA 1694679 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || || || || ||||||||||| Sbjct 1694678 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTTT 1694627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405061310523940