Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq35 104 2e-17 seq27 87.8 1e-12 >seq35 Length=7077570 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||| ||||| || |||||| | Sbjct 2782817 AAGCCCCTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 2782876 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | |||||||||||||||||| Sbjct 2782877 TCATCCATTCATGCACATCACTAATTAGATGACGA 2782911 >seq27 Length=10010218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || |||| |||| ||||| ||||||||| ||||| ||||| ||||| | Sbjct 3545020 CATT-CCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGT 3545078 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| || | || || | || || || ||||| || || | || || || | Sbjct 3545079 CTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTG 3545138 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| || ||| || || |||||| |||| || || || | | Sbjct 3545139 GGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCT 3545198 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || | || || || || || |||| ||| ||||| || ||||||||||| Sbjct 3545199 CAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3545253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334925131794386