Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq21 172 1e-37 seq27 165 2e-35 seq98 93.3 8e-14 >seq21 Length=13582449 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || ||||||| || | ||| || ||||| ||||| |||||||| || || | Sbjct 1694858 TTCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 1694799 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| | |||||| || || || || || || || ||||| || | Sbjct 1694798 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 1694739 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||||||||| || || ||||| |||||||| |||||||||||| | || | Sbjct 1694738 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 1694679 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | ||||||||| || ||||| |||||||| ||||| ||||||||| Sbjct 1694678 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATT 1694629 Score = 152 bits (168), Expect = 9e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || || || || || |||||||| || || || || || | Sbjct 1695075 AGGCGCAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 1695016 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || || ||||||||| Sbjct 1695015 CCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1694956 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||||||| ||| |||||||| | || || || | |||| Sbjct 1694955 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 1694896 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || ||||||||||| || ||||||||| Sbjct 1694895 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 1694857 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || || |||| || | ||| || || ||||| || || ||||| || || Sbjct 1695315 TTACCACCCCGCAGACGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCA 1695256 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | |||||||| | |||||| || || || || || || || ||||| || Sbjct 1695255 GACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 1695196 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||||||||| || || ||||| ||||||||| ||| |||||||| | || Sbjct 1695195 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCG 1695136 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| ||||| || || || || ||||||||||| || |||||||| Sbjct 1695135 ACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 >seq27 Length=10010218 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | ||||||| |||| ||| || ||||| || || || ||||| || || | Sbjct 3545022 TTCCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTG 3545081 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||||||| | |||||| || || || || || || || ||||| || | Sbjct 3545082 ACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 3545141 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||||||||| || || ||||| ||||| ||| |||||||||||| | || | Sbjct 3545142 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAA 3545201 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||| || || || |||||||| || || |||||||| Sbjct 3545202 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3545250 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||| || || || ||||| || || || || || | | Sbjct 3544805 AGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGC 3544864 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || |||||||||||| Sbjct 3544865 CCATCTTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCC 3544924 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| || || || ||||| | || ||||||| |||| Sbjct 3544925 TTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTG 3544984 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || ||||||||||| || ||||||||| Sbjct 3544985 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 3545023 Score = 140 bits (154), Expect = 6e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 || ||||| || ||||| || || | ||| ||||| | ||||||||| || || || || Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| || |||||||||||||| || || ||||| ||||| ||| ||| ||| Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATG 3544729 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | ||| || || | |||||||| || || || |||||||| ||||| ||| Sbjct 3544730 GTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 3544789 Query 68457 TGCAT 68461 ||||| Sbjct 3544790 TGCAT 3544794 >seq98 Length=1773073 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| || || ||| |||||||||||| | || || || Sbjct 1267707 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 1267648 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 1267647 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1267604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921560121366320