Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq27 107 2e-18 seq21 98.7 8e-16 >seq27 Length=10010218 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| || || || || |||||| || || || ||| Sbjct 3544826 GTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCA 3544885 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||| ||||| |||||||||||||| || || ||||| || Sbjct 3544886 GCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3544945 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| ||| ||||| |||| ||| | || ||||| ||||| || Sbjct 3544946 ACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 3545005 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 3545006 TTGACAAAGATCTGCAT 3545022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| || || || || |||||| || || || ||| Sbjct 3545054 GTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCA 3545113 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| || || ||||| || Sbjct 3545114 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3545173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 3545174 ACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 3545233 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3545234 TTCACAAAGATCTGCATG 3545251 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 114198 TGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGA 114257 ||||||||||| ||| || || || ||||| || || || ||||| |||| || Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 114258 CGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACG 114317 | ||| ||||| || ||||||||||| || || ||||| || | | |||| | Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATG 3544729 Query 114318 GTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 114377 ||||| ||| ||| || || | || | || ||||| ||||| || || || || ||| Sbjct 3544730 GTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 3544789 Query 114378 TGCAT 114382 ||||| Sbjct 3544790 TGCAT 3544794 >seq21 Length=13582449 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || || ||||| |||||| || || || ||| Sbjct 1695282 GTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCA 1695223 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| |||||||| || || ||||| || Sbjct 1695222 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTG 1695163 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| || | || ||||| ||||| || Sbjct 1695162 ACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTC 1695103 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1695102 TTGACAAAGATCTGCAT 1695086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420106719182472