Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq32 161 2e-34 seq2 93.3 8e-14 seq12 89.7 1e-12 >seq32 Length=7345140 Score = 161 bits (178), Expect = 2e-34 Identities = 182/237 (77%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || |||||||||||| || |||||||||||| ||||||| |||| | | || ||||| Sbjct 6867091 CACCCCCTTGCTGACCGGAGAGCCCTCGTAGGTGTGGTAGGGGCCGTGCTCCCT-GGCCA 6867149 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| ||||||| |||||||||||||| || ||| | | Sbjct 6867150 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGA-GG 6867208 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 ||| | |||| | ||| |||||||| | ||| | |||||| |||| ||||| ||| Sbjct 6867209 CGCTGTGCCTCGGCGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCC 6867268 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551 |||||||||||||||||||| | ||| || |||||||||| || || |||| || Sbjct 6867269 TGCACGCCGATGCCGATGGGGCGGTGCCGGCGGTTGGAGCGCTCGGCCTGCGGGGAC 6867325 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 6868851 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 6868910 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 6868911 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 6868970 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 6868971 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 6869030 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 6869031 TGCGCACGCGGCCCTGCCGCTCGTAGC 6869057 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || ||||||||||| || ||| |||||||||| | |||||| || Sbjct 6870097 CTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTC 6870156 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| ||| |||| || ||||||| ||| | |||||| ||||||| Sbjct 6870157 TTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGGCTCCAG 6870216 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||||| || | || ||||| Sbjct 6870217 GTAGATGGCAAAAGCCCCGGG 6870237 >seq2 Length=63311091 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 19108352 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 19108411 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || | |||||| ||| | || ||||| || ||||| Sbjct 19108412 GCTATATTTTGGCTGAAGAAGAGGGGCTTGATGCCTGGATTGACTTTCTCCAATGAACTT 19108471 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 19108472 ATTAGCAGAGATGAGG 19108487 >seq12 Length=17335395 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || |||||||||||||| ||| | || || || || || ||| Sbjct 8985441 GTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCTTTTGCATCAATTTTTTGG 8985382 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || || ||||||||||| || || Sbjct 8985381 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 8985322 Query 42828 GAGG 42831 |||| Sbjct 8985321 GAGG 8985318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944275386278560