Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 3e-15 seq21 86.0 6e-12 seq27 82.4 8e-11 >seq32 Length=7345140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 6868869 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 6868928 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 |||| || | ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 6868929 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 6868981 >seq21 Length=13582449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | |||||||||| |||||||||||||| | Sbjct 1695312 CCACCCCGCAGACGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 1695253 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || || | | |||| || | ||| ||||| ||||| Sbjct 1695252 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1695193 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || || | | || | |||||| | | ||| || Sbjct 1695192 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACT 1695133 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || ||||| |||||||| Sbjct 1695132 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 >seq27 Length=10010218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || || ||| || ||||| || || || | | Sbjct 3545057 GATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCA 3545116 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| || || ||| || || | Sbjct 3545117 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 3545176 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | || || |||||||| || || Sbjct 3545177 TTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 3545236 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 3545237 ACAAAGATCTGCATG 3545251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496228865068320