Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq93 167 3e-36 seq56 93.3 6e-14 >seq93 Length=1890510 Score = 167 bits (184), Expect = 3e-36 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 1179424 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 1179483 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 1179484 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 1179543 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| ||||| |||| ||| || || ||||||| || | ||| Sbjct 1179544 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 1179603 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 1179604 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1179663 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || | ||| ||||| || | |||| ||| || || ||||| || || ||| ||| Sbjct 1179664 TGGCATCAATGTCCCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 1179723 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || ||||| ||||| || || | |||||| || |||| || ||||| | ||| ||||| Sbjct 1181361 ATGAGACGGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGTCAGGGTGCTGGTGCTTGAGC 1181420 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||||||||| | ||||||||| | |||||| || ||||| |||||||| | || ||| Sbjct 1181421 ACATCGCAGACGCGGTTGTGTTCGCGCAGCCAGATCGTGGCATACATCATCAGCCCTGGC 1181480 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | ||||||||| || | |||||| | || |||| | || ||||| | ||||| Sbjct 1181481 ACCAGACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGCTCAGGCACATGGGGCGGG 1181540 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 |||||||| | |||| || || ||||| || || |||||||| || Sbjct 1181541 TACAGCATCTCTGCCTGTGTGTCCCGCACGGTCGGCGGGTACATTTCTCC 1181590 Score = 111 bits (122), Expect = 2e-19 Identities = 109/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| |||| ||||| ||||| ||||| || || ||||||||| Sbjct 1180289 TCAGGCAGCAGTGGGTGCCAGTGGTACAGGGTGTTGAATTCGGCTGCAATGCGGTTCTGG 1180348 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || ||| |||||| | ||| |||||||| | |||| ||||||||||| Sbjct 1180349 TACTGGAACCTCTGGT--TGAACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACC 1180406 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| || ||||| ||||| Sbjct 1180407 CGCTCAGGTGCTGCACATA 1180425 >seq56 Length=3924218 Score = 93.3 bits (102), Expect = 6e-14 Identities = 198/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||||||| || | ||| || | || ||| | Sbjct 1645970 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTTGAGGGATGCCG 1646029 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | || || || |||||||||||||||||| | |||| Sbjct 1646030 TCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCCAGTACTCTGGGG 1646089 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| || | | ||||| || | |||||| ||||| || | ||| | |||| Sbjct 1646090 AGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCGATCTCCACCATGC 1646149 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| ||| | ||||| || | | ||||| | ||| | || | Sbjct 1646150 TTTCCCCAAAAATGCTGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCA 1646209 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || | || | ||| ||| Sbjct 1646210 GAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCT 1646265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723679094080400