Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11]
5,406 sequences; 1,042,997,632 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq93 167 3e-36
seq56 93.3 6e-14
>seq93
Length=1890510
Score = 167 bits (184), Expect = 3e-36
Identities = 217/300 (72%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||| ||| || ||||| ||| | || || |
Sbjct 1179424 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 1179483
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || |||||||| || || || | || |||||||||||||| ||||||||| | ||||
Sbjct 1179484 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 1179543
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| | || |||| ||||| |||| ||| || || ||||||| || | |||
Sbjct 1179544 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 1179603
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
|||| || |||||||| ||||| || || || || || | | ||| | ||| || || |
Sbjct 1179604 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1179663
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179
|| || | ||| ||||| || | |||| ||| || || ||||| || || ||| |||
Sbjct 1179664 TGGCATCAATGTCCCCATACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 1179723
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| ||||| ||||| || || | |||||| || |||| || ||||| | ||| |||||
Sbjct 1181361 ATGAGACGGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGTCAGGGTGCTGGTGCTTGAGC 1181420
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
||||||||||| | ||||||||| | |||||| || ||||| |||||||| | || |||
Sbjct 1181421 ACATCGCAGACGCGGTTGTGTTCGCGCAGCCAGATCGTGGCATACATCATCAGCCCTGGC 1181480
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| | ||||||||| || | |||||| | || |||| | || ||||| | |||||
Sbjct 1181481 ACCAGACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGCTCAGGCACATGGGGCGGG 1181540
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956
|||||||| | |||| || || ||||| || || |||||||| ||
Sbjct 1181541 TACAGCATCTCTGCCTGTGTGTCCCGCACGGTCGGCGGGTACATTTCTCC 1181590
Score = 111 bits (122), Expect = 2e-19
Identities = 109/139 (78%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| ||| | |||||| |||| ||||| ||||| ||||| || || |||||||||
Sbjct 1180289 TCAGGCAGCAGTGGGTGCCAGTGGTACAGGGTGTTGAATTCGGCTGCAATGCGGTTCTGG 1180348
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
||||| || ||| |||||| | ||| |||||||| | |||| |||||||||||
Sbjct 1180349 TACTGGAACCTCTGGT--TGAACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACC 1180406
Query 9671 CGCTGAGTTGCTGGACATA 9689
|||| || ||||| |||||
Sbjct 1180407 CGCTCAGGTGCTGCACATA 1180425
>seq56
Length=3924218
Score = 93.3 bits (102), Expect = 6e-14
Identities = 198/296 (67%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
||||||| | |||| || |||||||||| || | ||| || | || ||| |
Sbjct 1645970 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTTGAGGGATGCCG 1646029
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || || || || || || | || || || |||||||||||||||||| | ||||
Sbjct 1646030 TCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCCAGTACTCTGGGG 1646089
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| || | | ||||| || | |||||| ||||| || | ||| | ||||
Sbjct 1646090 AGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCGATCTCCACCATGC 1646149
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| || || || ||| ||| | ||||| || | | ||||| | ||| | || |
Sbjct 1646150 TTTCCCCAAAAATGCTGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCA 1646209
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| || | ||| ||||| || |||||| || || || | || | ||| |||
Sbjct 1646210 GAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCT 1646265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723679094080400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |