Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq21 131 2e-25 seq27 123 2e-23 seq12 91.5 1e-13 seq2 84.2 2e-11 >seq21 Length=13582449 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 1694857 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1694916 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| || || || || || || | |||| Sbjct 1694917 TGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACC 1694975 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| |||| ||| ||||| |||||||| || | || ||||| ||||||| Sbjct 1694976 AGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACA 1695035 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||| | || |||||| | |||||||| | ||||| || Sbjct 1695036 ACATCCAGAAGGAATCTACCCTGCATCTTGTGCTGCGCCTCAGAGGTGG 1695084 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || |||||||| ||||||||| | || |||||| | Sbjct 1694626 AAAAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCC 1694685 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| || || || || || || | || Sbjct 1694686 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGA 1694745 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | || ||||| ||||| Sbjct 1694746 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTA 1694805 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || ||| | || ||||| | || ||||| Sbjct 1694806 CAACATCCAGAAAGAATCCACTCTGCACCTTGTCCTGCG 1694844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || ||||| | || |||||| ||| Sbjct 1695086 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1695145 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || || | ||||| Sbjct 1695146 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1695204 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | || ||||| |||||||| Sbjct 1695205 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1695264 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || ||||| | || |||||| || | || || Sbjct 1695265 CATTCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGTCTGCGGGGTGG 1695312 >seq27 Length=10010218 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 3545023 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 3544964 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | || | || |||| || || || || ||||| | ||||| Sbjct 3544963 TGACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCA 3544904 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| ||| ||||| ||||| || || | ||||||||| |||||||| Sbjct 3544903 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAA 3544844 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || |||||| | || || || |||||||||| Sbjct 3544843 CATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCG 3544808 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 3545253 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 3545194 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || || || |||||| | || Sbjct 3545193 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGA 3545135 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| ||||| || || | ||||||||| ||||| Sbjct 3545134 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTA 3545075 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || |||||| | || || || |||||||||| |||| || || Sbjct 3545074 CAACATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTGAGGGGAGG 3545024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || || ||| Sbjct 3544794 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 3544735 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 3544734 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 3544676 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 3544675 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 3544616 Query 38423 CATCCA 38428 ||| || Sbjct 3544615 CATTCA 3544610 >seq12 Length=17335395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| || || Sbjct 8987848 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATATCGTG 8987907 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || |||||||||||||| || |||| |||||||||| Sbjct 8987908 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 8987962 >seq2 Length=63311091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| | ||| | || | Sbjct 19108487 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 19108428 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 19108427 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 19108368 Query 133037 CCACCA 133042 | |||| Sbjct 19108367 CAACCA 19108362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139000823040