Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8 280 2e-70 seq48 154 2e-32 seq12 84.2 3e-11 >seq8 Length=28527819 Score = 280 bits (310), Expect = 2e-70 Identities = 1025/1592 (64%), Gaps = 22/1592 (1%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 2176258 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTTGCT 2176199 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || || ||||| | ||||| | | ||| || | Sbjct 2176198 GAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCTGTGCTCTTGTCCAC 2176139 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||||| || |||| |||||||| ||||| | || || | || | || || || Sbjct 2176138 GGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 2176079 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 2176078 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 2176019 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| ||||| || | | || || | | || || ||| Sbjct 2176018 TGTCATAGCCCTCTCACCCTCATACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAGT 2175960 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | || Sbjct 2175959 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCGG 2175900 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || ||||| || | || Sbjct 2175899 TCATCACTCCTCCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCA 2175840 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || ||| || | || ||| | | ||| || ||||| || | || || | Sbjct 2175839 GATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCGCCAT 2175780 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||| ||||| || | || || || || ||||| || || ||||| Sbjct 2175779 AAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCCTTACCATTGAAGAAATCCT 2175720 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 || || | || || || ||||| || || || ||||| |||| ||||| || | | Sbjct 2175719 GTAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCTGGA 2175660 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | || || || || |||| || Sbjct 2175659 TCTGGCCCTTGTCGAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 2175600 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| ||||| ||||| || || ||||| |||| Sbjct 2175599 GGAAGAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTAATAGAGGTGTAGAAGTCAA 2175540 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 || || | | || ||||| |||||| | | |||| | || | || |||| Sbjct 2175539 TACCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTCCGCT 2175480 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 | || | |||||| ||||| || | || | | || ||| ||| || | || || Sbjct 2175479 TCGCTCTCTCACAAGCCGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCGATGTCGC 2175420 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 ||| || || || || || ||||| ||||| | | | || || || | Sbjct 2175419 GCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGTCCT 2175360 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | |||||||| || || || || || || | || || ||||| || || | |||||| Sbjct 2175359 CTCCACCCAAATGGGTGTCACCGGCCGTGGACTTTACCTCAAAAATCCCATCCTCAATGG 2175300 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | | || ||||| || || || || ||||||||||| ||||| || ||| | || Sbjct 2175299 TAAGGATTGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACATTCTTCTCTC 2175240 Query 7587 C------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | | | ||||| || || ||||| || ||||| || || || || ||||| | Sbjct 2175239 CAGCCCGGGTTCCTTTCTTGTCCAGGCCGTAAGCAATAGCAGCTGCAGTGGGCTCATTGA 2175180 Query 7641 TAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | ||||| | ||| || ||||||| || || | ||||| || || || || || || Sbjct 2175179 TGATACGCATCACA-TTGAGGCCAGTGATGGTGCCGGCATCCTTGGTGGCCTGGCGCTGG 2175121 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| || ||||| ||||| || || | ||| |||| | || || || ||||| Sbjct 2175120 GAATCATTGAAGTACGCCGGCACTGTGATGACAGCGTTCTGCACCTTGCACCCTAGATAG 2175061 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 2175060 GCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAAGAA 2175002 Query 7820 TGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGGGA 7877 || ||| | || || || | || || | | | |||| || || || | || | Sbjct 2175001 GGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GCCGCTCTCGTTCA 2174946 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 || | | ||||| ||||| || || ||| |||| | |||| | | Sbjct 2174945 CCACACGGAAAGGCCAATGCTTCATGTCTGACTGCACCGTGGGGTCATCATACTTGCGGC 2174886 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| || ||||| || ||||| | ||||| |||||||||| ||| |||||||| | Sbjct 2174885 CGATGAGGCGCTTGGCGTCAAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTTCTTAG 2174826 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTT 8056 | || |||||||| || || || || || || ||||| || || | |||| || || Sbjct 2174825 CAGCATCCCCGATGAGGCGCTCTGTA---TCGGTGAACGCCACATA-GCTGGGTGTGGTG 2174770 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| || || || || || | ||| || | || || ||||| Sbjct 2174769 CGGTTACCCTGGTCGTTGGCGATGATCTCCACTTTGCCGTGCTGGAAAACACCCACGCAG 2174710 Query 8117 GAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || || | || || ||||| || Sbjct 2174709 GAGTACGTGGTGCCCAGGTCGATGCCGATCGC 2174678 >seq48 Length=4916287 Score = 154 bits (170), Expect = 2e-32 Identities = 358/540 (66%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||||||||| || | || || || ||||| ||||| || Sbjct 3714631 GCACCATACGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 3714572 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || || || || ||||| || || || || || |||| ||||| Sbjct 3714571 AAGTCCTGCAGCAGTTTCTGGATCTTGGGGATGCGCGTGGAGCCTCCCACCAGCACGATG 3714512 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || || | ||| | ||| | || | || || || || |||| Sbjct 3714511 TCGTGGATCTGCGACTTGTCCAGCTTGGCGTCCCTCAGGGCCTTCTCCACGGGGTCCAGG 3714452 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| || ||||| || || || | ||| ||||| || ||| Sbjct 3714451 GTGCCGCGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 3714392 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || || ||| | | || | | || || | Sbjct 3714391 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 3714332 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 3714331 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 3714272 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | |||||| | | | || Sbjct 3714271 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCA 3714212 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||||||| || ||||| || || | ||| || |||||||| || || Sbjct 3714211 AAGTCCTCCCCACCCAAGTGGGTGTCCCCTGCCGTGGATTTCACCTCAAAGATGCCATCT 3714152 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || |||||||| || || ||||||||||| || ||||| || ||| Sbjct 3714151 TCGATGGTCAGGATGGACACATCAAAGGTGCCGCCACCCAGGTCGAAGATGAGGACATTC 3714092 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || || || || || || || || || || || || || || || || | Sbjct 3713991 TTCTTGTCCAGCCCATAGGCAATGGCAGCTGCTGTGGGCTCGTTGATGATTCGCAGCACG 3713932 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||||||| | ||||||||||| || || || || || ||||| || ||| Sbjct 3713931 TTGAGCCCTGCAATAGTTCCAGCATCTTTCGTTGCCTGGCGCTGGGAGTCGTTGAAATAG 3713872 Query 7715 GCCGGGACCGTTACGACCGC 7734 || ||||| || || || || Sbjct 3713871 GCTGGGACAGTCACTACTGC 3713852 >seq12 Length=17335395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 115365 CATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCT 115424 ||||||| |||||| ||| |||||||||||| |||| | || || | ||| ||||| Sbjct 8985314 CATACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCT 8985372 Query 115425 CTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGC 115484 || || | ||||||||| | |||| || |||||||| || ||||| || || Sbjct 8985373 TTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGC 8985432 Query 115485 AAAGGCTAATAAACGTTC 115502 |||||||| || |||||| Sbjct 8985433 AAAGGCTACTACACGTTC 8985450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635089880901040