Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq27 141 2e-28 seq21 131 4e-25 >seq27 Length=10010218 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || |||||||||||||| || || ||||| ||||| || | || || Sbjct 3544802 CTGAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTG 3544861 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||||||||||||| || ||||| || || | || |||||||||||||||||| Sbjct 3544862 CGCCCATCTTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCT 3544921 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || || || || || || ||| || || ||||| ||||| ||| || ||||| Sbjct 3544922 TCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTC---ACTGGGCTCGACTTCC 3544978 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || |||| || || || || | |||||| Sbjct 3544979 AGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 3545023 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||||||||| || || ||||| ||||| || | || || | |||||||||| Sbjct 3545042 ACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCG 3545101 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||| || || || Sbjct 3545102 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 3545161 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| || || |||||||| | ||| Sbjct 3545162 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 3545218 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 3545219 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3545250 Score = 123 bits (136), Expect = 6e-23 Identities = 141/188 (75%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGT 195015 ||||| ||||| |||| || || | ||| ||||| |||||||| || || ||||| || Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 | || |||||||| ||||||||||| || || || || || ||| |||||||||||| Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATG 3544729 Query 195076 GTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||| ||| |||||| ||||| || | ||||| || |||| || || ||||| Sbjct 3544730 GTGTC---ACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAG 3544786 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 3544787 ATCTGCAT 3544794 >seq21 Length=13582449 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || ||||| ||||| || | || || | |||||||| Sbjct 1695294 ACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 1695235 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| ||||| |||||||| || || || Sbjct 1695234 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 1695175 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| || ||||| || || | ||| Sbjct 1695174 ATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACTTCCAGAGTGATAGTC 1695118 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1695117 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 Score = 125 bits (138), Expect = 2e-23 Identities = 164/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| || || || || || || || || ||||| || | || || Sbjct 1695079 TCTGAGGCGCAGCACAAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 1695020 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || ||||| || || | || ||||| ||||| ||||| Sbjct 1695019 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATGCC 1694960 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| || || || || || ||||||||||||||||||||| ||| || || || Sbjct 1694959 TTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTC 1694903 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||| | ||||| || |||| || || || || | |||||| Sbjct 1694902 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 1694857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109404752450402