Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12 120 3e-22 >seq12 Length=17335395 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 8985318 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 8985377 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||| ||||| || ||||| ||||||||||| | Sbjct 8985378 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAGG 8985437 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 8985438 CTACTACACGTTCTCC 8985453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 19244 TCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 ||||||| |||||||||||||||||| |||||||| || || ||||| || || ||| Sbjct 8987043 TCAATAAGGAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAGCCATAA 8987102 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| | |||||||| || |||||||| Sbjct 8987103 AAACAACGAGCTTCTGTGATTTGTACTTC 8987131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562070815497840