Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq48 105 5e-17 >seq48 Length=4916287 Score = 105 bits (116), Expect = 5e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||||||| | ||||| ||||| ||||| || ||||| || || || || || Sbjct 3713843 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACG 3713902 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || || || || || || ||||| || || || || Sbjct 3713903 AAAGATGCTGGAACTATTGCAGGGCTCAACGTGCTGCGAATCATCAACGAGCCCACAGCA 3713962 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 3713963 GCTGCCATTGCCTATGGGCTGGACAA 3713988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029010106338940