Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-22 seq58 87.8 1e-12 >seq2 Length=63311091 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||||| || || |||||||||||||| || || |||||||| || |||||||| Sbjct 46426739 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAGGGC 46426680 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || |||||||| ||||| || || || | || || | Sbjct 46426679 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 46426620 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 || || ||||| || | || ||||| ||||| | |||||| ||| Sbjct 46426619 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGG 46426575 Score = 105 bits (116), Expect = 5e-18 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 46423113 CATATCTTTGTATTCTGCTCCAAAATGCCTCCATTGGAAACCATACACTGGTCCCAAATC 46423054 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 46423053 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 46422995 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || || || | || ||||| |||| ||||| || || || || || | Sbjct 46422994 CCCAAATCTTCACACCTTTTGCAGAAAGCTCCTTGGCATTTGTAGAACC-CT-ACAAAAC 46422937 Query 30329 ACAG 30332 |||| Sbjct 46422936 ACAG 46422933 >seq58 Length=3607375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| || | || || |||||| | | ||| | ||||| || || Sbjct 3019888 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 3019829 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 3019828 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 3019781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408590677974038