Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq32 136 7e-27 seq98 132 9e-26 seq86 118 2e-21 seq59 89.7 1e-12 seq12 86.0 1e-11 >seq32 Length=7345140 Score = 136 bits (150), Expect = 7e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 6868868 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 6868927 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 6868928 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 6868987 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 6868988 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 6869030 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || || ||||| ||| | | ||||||||| |||||| |||||||||| Sbjct 6867095 CCCTTGCTGACCGGAGAGCCCTCGTAGGTGTGGTAGGGGCCGTGCTCCCTGGCCAGCTCA 6867154 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||| ||||| || || || | | |||||| || Sbjct 6867155 CAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGT 6867214 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| | | | |||||| | | ||||| | ||| | |||||||| ||||| || Sbjct 6867215 GCCTCGGCGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACG 6867274 Query 213321 CCGATGCCGATGGGTCTGTG 213340 |||||||||||||| | ||| Sbjct 6867275 CCGATGCCGATGGGGCGGTG 6867294 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| | ||| | ||| ||||||||||||||| Sbjct 6865180 CTGGAACTCCCCCGAGAGCACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 6865239 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| |||||| |||||||| | | ||||| || Sbjct 6865240 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAAATGAGGAGGCT 6865299 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 6865300 GTTCCTGACACCGT 6865313 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| ||||| |||||||||||||| | | | Sbjct 6870092 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGC 6870151 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || || || || || |||||||||||| |||||| ||| Sbjct 6870152 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCATGGC 6870211 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 6870212 TCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 6870242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 6863038 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 6863097 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||||||||| ||||||||| |||||| ||| | || ||||| ||||| | | || Sbjct 6863098 TTTCTGGGAGATCTCCCACACTGTCTTGTAGAGCTGCTTCAGGTCATCTGGAATCTCAGG 6863157 Query 212816 GATGTTCTG 212824 |||||||| Sbjct 6863158 AATGTTCTG 6863166 >seq98 Length=1773073 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||| ||||| || || || | | ||||| || || Sbjct 1143894 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGTAGCAGGCTGGCGGTGGAGGCGAGC 1143953 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||||||||| | ||| || ||||| Sbjct 1143954 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGC 1144013 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| ||| | ||| |||||||||||| Sbjct 1144014 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTGAGCCGCTTCCGTTCCGCCTTG 1144073 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1144074 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 1144106 >seq86 Length=2036463 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || || | | ||||| || ||| | ||||| | | Sbjct 781589 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 781530 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | ||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 781529 TTGAGCGCTTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 781470 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | |||||| || || | ||| || || ||||| | || |||||| | Sbjct 781469 TTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 781410 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 781409 TCCGCGTCCAGCGGCGAC 781392 >seq59 Length=3286128 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| |||||||||||||| | | |||||| ||||| | | ||| ||| Sbjct 904664 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAATGGTGTGGTCCTCCAGGTTCTTCTCCCTC 904723 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||||||| |||||||||| || || || |||||||||||| Sbjct 904724 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCAGTGGTTCTGTC 904767 >seq12 Length=17335395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| | || || || ||| |||||||| | || || | || ||||| ||| Sbjct 8985329 CTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTCAGCCAAAAA 8985388 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || ||||||||||||||||||||||| |||||||| || || || Sbjct 8985389 ATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAGGC 8985438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931469851671040