Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq32 100 5e-16 >seq32 Length=7345140 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 6868851 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 6868910 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 6868911 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 6868970 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 6868971 TGCCAGTCTC 6868980 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||||||||| | ||| | ||| ||| | || ||||| Sbjct 6865177 CACCTGGAACTCCCCCGAGAGCACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGAT 6865236 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| || |||||||| | | || || Sbjct 6865237 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAAATGAGGAG 6865296 Query 221242 ACTGTT 221247 ||||| Sbjct 6865297 GCTGTT 6865302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928782033312640