Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq15 228 9e-55 seq11 134 2e-26 >seq15 Length=16539498 Score = 228 bits (252), Expect = 9e-55 Identities = 658/1004 (66%), Gaps = 10/1004 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| || | || || || ||| || Sbjct 6262593 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCACTTCACTGCAAAAGGGTCGACA 6262652 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || || | ||||| ||| |||| ||||||| || |||| Sbjct 6262653 TCAGTGTCAAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 6262709 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 6262710 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCA 6262769 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| ||||||||||||| ||||| ||||| | || | |||| Sbjct 6262770 CCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATG 6262829 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || ||| || |||| || | || | || ||||| || || | || || | || Sbjct 6262830 TCAGAAACGTCATACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 6262887 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 6262888 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACT 6262947 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| || || | || || |||| | || ||||| || | Sbjct 6262948 TAAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGCTTCTGCTAACTACAAAATAAG 6263007 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 6263008 CACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTATGCCTGTGTTCT 6263067 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | || | | | || | || |||||||| || || | ||||| Sbjct 6263068 TTATTTTACCATCAACAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACTGGCA 6263127 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 6263128 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCT 6263187 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| |||| |||| |||||| | ||| ||||| || | | Sbjct 6263188 GGTTTGTCTTTATAGGAAAGTCCATACCACACAGGTTTATTAGGTATTTCCAGTTTGAAC 6263247 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | ||| || || ||||||| ||||| || |||||||| | |||||| ||||| | Sbjct 6263248 TTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCCGCCTGCACTCTGCTCCATGAAGCAT 6263307 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || | |||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 6263308 ATACCACACTTTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 6263367 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | ||| || | ||| Sbjct 6263368 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTC 6263426 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || |||||||| | || || | || || | |||||| || || |||| | || Sbjct 6263427 TGTGGAGCGTAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACAACT 6263486 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 || ||||| || || ||||| || | || || ||| || | | | | | ||| || Sbjct 6263487 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAGGCTCCATAATGTATTTC 6263546 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || | |||| || |||||||| ||||| Sbjct 6263547 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 6263590 >seq11 Length=20308778 Score = 134 bits (148), Expect = 2e-26 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| || || || ||||| |||| ||| |||| || || |||||| | Sbjct 4854531 TGTGGCGCAGGTGCTCCTCGAGACACTGGAGGGCCGCATCGTCCACCTCGGGGTCGAACT 4854590 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 4854591 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 4854647 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| || || ||| |||| |||| |||||||| || || || | || Sbjct 4854648 TGCAGATGGCGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGCCGCGCCCTTGCTGATGT 4854707 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 4854708 CCCCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGA 4854767 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | ||||| | | || || ||||| ||||| || | ||||||||||| | Sbjct 4854768 ACTTGTCGCTGGGGGGAGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 4854827 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 ||| |||||||||||||| ||||||| ||||| || | ||||| Sbjct 4854828 CGTGCTCGTCGGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 4854872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577180194412560