Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq8 300 2e-76 seq21 199 5e-46 seq27 188 9e-43 seq48 104 3e-17 seq98 98.7 1e-15 seq56 87.8 2e-12 >seq8 Length=28527819 Score = 300 bits (332), Expect = 2e-76 Identities = 1036/1595 (65%), Gaps = 33/1595 (2%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | || | | Sbjct 2174678 GCGATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTTTTCCAGCACGGCAAA 2174737 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || || || || Sbjct 2174738 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 2174797 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| ||| |||||||| | ||| Sbjct 2174798 GATACAGAGCGCCTCATCGGGGATGCTGCTAAGAACCAGGTAGCAATGAACCCCACCAAC 2174857 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||||||||| ||||| || || || ||||||| | || | || || Sbjct 2174858 ACCATCTTTGACGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCA 2174917 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| | ||| ||| || || || | | ||| ||||| | | | | Sbjct 2174918 GACATGAAGCATTGGCCTTTCCGTGTGGTGAACGAGAGCGGC----AAGCCCAAGGTGCA 2174973 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | || |||| ||| | || |||| || || || || |||||| Sbjct 2174974 GGTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGC 2175032 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTT 195715 | | ||||||||||||| ||| || | | || |||| || ||| | | || || Sbjct 2175033 TCACCAAGATGAAGGAGATTGCTGAGGCCTATCTAGGGTGCAAG-GTGCAGAACGCTGTC 2175091 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 | || || || || ||||||| |||||| || || ||||| || ||||| || | | Sbjct 2175092 ATCACAGTGCCGGCGTACTTCAATGATTCCCAGCGCCAGGCCACCAAGGATGCCGGCACC 2175151 Query 195776 ATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || | || || || ||| | | || |||||||| || || || ||||| |||||||| Sbjct 2175152 ATCACTGGCCTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCTGCTATTGCTTA 2175210 Query 195835 TGGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 || ||||||||||| | || | ||| || ||||| | |||||||| || || Sbjct 2175211 CGGCCTGGACAAGAAAGGAACCCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACCTGGG 2175270 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 || || || || ||||||||| | || | ||||| | ||| || || || |||||| | Sbjct 2175271 AGGGGGCACTTTCGATGTCTCAATCCTTACCATTGAGGATGGGATTTTTGAGGTAAAGTC 2175330 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TT 196007 || || ||||| || ||| | ||||| || || || || || | | || || Sbjct 2175331 CACGGCCGGTGACACCCATTTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTT 2175390 Query 196008 TGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTC 196067 ||| || || ||| || ||| | ||| || || |||| || | || | Sbjct 2175391 TGT-GGAAGAATTCAAGCGCAAGCACAAGCGCGACATCGCTGGCAACAAGCGAGCGGTGA 2175449 Query 196068 GTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAA 196127 | ||||| | || || ||||| | || || || || ||| || | | || | | Sbjct 2175450 GGCGGCTGCGCACGGCTTGTGAGAGAGCGAAGCGGACCCTCAGCTCCTCCACACAGGCCA 2175509 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 |||||||||| || | ||||| || ||||||||||| || ||||||| ||||| | Sbjct 2175510 GCATTGAGATTGACTCTCTCTTTGAGGGTATTGACTTCTACACCTCTATTACTCGTGCCC 2175569 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 ||||||| ||| | || |||| | || | |||| || || || | | | Sbjct 2175570 GTTTTGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTC 2175629 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | ||||| || ||| | || ||| || | | || || || || ||||| || || | Sbjct 2175630 TGCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCTA 2175689 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACA 196367 |||| || || ||||| || || |||| ||||||||| ||| || | |||| Sbjct 2175690 CCCGGATCCCCAAGATCCAGAAGCTGCTACAGGATTTCTTCAATGGTAAGGAGCTCAACA 2175749 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | |||||||| ||||| || || |||||||| || || || || || ||||| || Sbjct 2175750 AGAGCATCAACCCTGATGAGGCTGTGGCTTATGGCGCTGCTGTACAAGCAGCTAT--CCT 2175807 Query 196428 CAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 || | | ||||| | | || || || ||||| ||||| | ||||| | || | | Sbjct 2175808 CATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGT 2175866 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 ||||||| | || || || || || || ||||| | || | | ||||| || | Sbjct 2175867 CCCTGGGCATCGAGACGGCTGGAGGAGTGATGACCGCTCTCATCAAGCGCAACACCACCA 2175926 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCAT 196603 | || || || | || ||| | || || || || || || | || | || | Sbjct 2175927 TCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCCTG 2175985 Query 196604 ATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACT 196660 | || || ||||| | |||| ||| || ||| ||||||| | | || || | Sbjct 2175986 GTCCAGGTGTATGAGGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCAAG 2176042 Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTC 196720 || || | || || || || | |||||||| || || || ||||| | || || Sbjct 2176043 TTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTTTT 2176102 Query 196721 GATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT 196780 || || || || ||||| || || ||||||| || | ||||||| | || || Sbjct 2176103 GACATCGATGCCAATGGTATCCTGAACGTCAGTGCCGTGGACAAGAGCACAGGTAAGGAG 2176162 Query 196781 GAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATG 196840 | ||||| || ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 2176163 AACAAGATCACCATCACCAACGACAAGGGTCGCCTCAGCAAGGATGACATTGACCGTATG 2176222 Query 196841 GTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || ||||| || || ||||||| | ||| || || Sbjct 2176223 GTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 2176257 >seq21 Length=13582449 Score = 199 bits (220), Expect = 5e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| ||||| || |||||||| || || || ||| | Sbjct 1695086 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1695145 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || |||||||||||||| || || || ||| Sbjct 1695146 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1695205 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| |||||||| |||| |||||| Sbjct 1695206 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1695265 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| |||||||| ||||| |||||||| || | || ||||||||| Sbjct 1695266 ATTCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGTCTGCGGGGTGGT 1695313 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||| ||||| ||| | Sbjct 1694630 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1694689 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| |||||||| || |||||||||||||| || || || ||| Sbjct 1694690 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1694749 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| |||||||| |||| |||||| Sbjct 1694750 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1694809 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || ||||| |||||||| || | || |||||||| Sbjct 1694810 ATCCAGAAAGAATCCACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1694856 Score = 179 bits (198), Expect = 5e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| ||||| || || |||||||| ||||| ||| | Sbjct 1694858 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1694917 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || |||||||||||||| || || || ||| Sbjct 1694918 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1694977 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||||| |||||||| |||||||| |||| |||||| Sbjct 1694978 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1695037 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| ||||| || || ||||| || Sbjct 1695038 ATCCAGAAGGAATCTACCCTGCATCTTGTGCT 1695069 >seq27 Length=10010218 Score = 188 bits (208), Expect = 9e-43 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| | Sbjct 3545250 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3545191 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||||| || ||||||||||||||||| || || ||| Sbjct 3545190 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3545131 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 3545130 CAGAGGCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAAC 3545071 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| ||||| || ||||| ||||| || || Sbjct 3545070 ATTCAGAAGGAATCCACTCTTCACCTGGTGCT 3545039 Score = 170 bits (188), Expect = 3e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| ||||| || || |||||||| || || ||| | Sbjct 3545022 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3544963 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || ||||||||||||||||| || || ||| Sbjct 3544962 GACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAG 3544903 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 3544902 CAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAAC 3544843 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| ||||| || ||||| ||||| || || | || ||||||| Sbjct 3544842 ATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTCAGGGGTGG 3544796 Score = 140 bits (154), Expect = 4e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| ||||| || || ||||| || ||||| || | Sbjct 3544794 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 3544735 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || ||||||||||||||||| || || ||| Sbjct 3544734 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3544675 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || ||||| | || |||||| Sbjct 3544674 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 3544615 Query 172042 GTTCA 172046 |||| Sbjct 3544614 ATTCA 3544610 >seq48 Length=4916287 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| || || || || ||||| || || || | Sbjct 3713850 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACGAAAGATG 3713909 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| ||||||| || || ||| || |||| ||||| || || ||||| ||||| | Sbjct 3713910 CTGGAACTATTGCAGGGCTCAACGTGCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 3713969 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| ||||| ||||||||||| Sbjct 3713970 TTGCCTATGGGCTGGACAAGAA 3713991 >seq98 Length=1773073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||| | Sbjct 1267604 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 1267663 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 1267664 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 1267707 >seq56 Length=3924218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| ||||||||| | || | ||| || || | | Sbjct 828839 AACAGCTGCTGCCATTGCTTATGGACTGGACAAG---AGAGAGGGAGAGAAGAACATCCT 828895 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | ||||| || || ||||| || |||||||| || || || | ||||| || | Sbjct 828896 TGTATTTGACCTGGGCGGTGGGACTTTTGATGTGTCCCTCCTTACAATTGACAACGGAGT 828955 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||| ||| |||||| ||||| || ||||| ||||| || || Sbjct 828956 CTTTGAAGTTGTGGCGACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 829009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657817944948320