Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq27 89.7 8e-13 >seq27 Length=10010218 Score = 89.7 bits (98), Expect = 8e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||||| || || || || | |||||||| Sbjct 3545023 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 3544964 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| ||| ||||| || || || ||||| |||||||| |||||||| || Sbjct 3544963 TGACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCA 3544904 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||||| || || ||||||||||||||| Sbjct 3544903 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGAT 3544867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731822543749600