Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq27 118 1e-21 seq21 116 3e-21 >seq27 Length=10010218 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 3545022 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3544963 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || || ||||| || ||||| || || Sbjct 3544962 GACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAG 3544903 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || || ||||| || ||| | | | | ||||||| || ||| Sbjct 3544902 CAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAAC 3544843 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || ||| ||||| |||| Sbjct 3544842 ATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCG 3544808 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 3545250 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3545191 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 3545190 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3545131 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | | ||||||| || ||| Sbjct 3545130 CAGAGGCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAAC 3545071 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || ||| ||||| |||| || | ||||| Sbjct 3545070 ATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTGAGGGGAGG 3545024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 3544795 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAG 3544736 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 3544735 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 3544676 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| ||||| |||||||| || | | | | |||| || || || Sbjct 3544675 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 3544616 Query 24883 CATTCA 24888 |||||| Sbjct 3544615 CATTCA 3544610 >seq21 Length=13582449 Score = 116 bits (128), Expect = 3e-21 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || ||||| || || ||||| || ||| Sbjct 1695085 GATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTCGAGCCCAG 1695144 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 1695145 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1695204 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 1695205 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1695264 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 |||||| ||||| || || || ||| | || |||| |||| || | | |||||| || Sbjct 1695265 CATTCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGTCTGCGGGGTG--GTAACTGAACC 1695322 Query 24943 A 24943 | Sbjct 1695323 A 1695323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1694630 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1694689 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 1694690 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1694749 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 1694750 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1694809 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||| | || |||| |||| || || Sbjct 1694810 ATCCAGAAAGAATCCACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1694856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1694858 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1694917 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 1694918 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1694977 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || || |||||||| ||| | | | |||| || || ||| Sbjct 1694978 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1695037 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || | ||| |||| Sbjct 1695038 ATCCAGAAGGAATCTACCCTGCATCTTGTGCTGCG 1695072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449867198169680