Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq12 122 8e-23 >seq12 Length=17335395 Score = 122 bits (134), Expect = 8e-23 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||||||||| || | ||| |||||||||||| | |||||| |||||| | | ||||| Sbjct 8692475 AGCATTTGGGGACCAACCTGTGATGGCTTAGATCGGATTGTTGAGCGGTTTAATATGCCA 8692534 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 ||||| ||||| || |||||| || |||||||||||||||| || || | || |||| Sbjct 8692535 GAGCTGCAAGTTGGTGACTGGATCCTATTTGAAAACATGGGTGCCTATA-CTGTTGCAGC 8692593 Query 21245 -TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 |||| || || || || |||| | |||| || |||||||| || || Sbjct 8692594 AGCTTCTACTTTCAATGGATTCCAGAGGCCAACAATTCACTATGTGATGTC 8692644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463514275906080