Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21 132 5e-26 seq27 131 2e-25 seq32 91.5 1e-13 >seq21 Length=13582449 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| || || || | | | || || |||| Sbjct 1695061 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCT 1695003 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| |||| |||| ||||||||| ||||||||||||||||| || ||||| Sbjct 1695002 GCTTGCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCT 1694943 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 1694942 TGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAG 1694883 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 1694882 TCAGGGTCTTGACAAAGATCTGCAT 1694858 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || || | | | || || ||||||||||| Sbjct 1694826 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTGCC 1694768 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||||||||||||||| || |||||| ||| Sbjct 1694767 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 1694708 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1694707 GACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGT 1694648 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1694647 CTTCACGAAGATCTGCAT 1694630 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || | | | || || ||||||||||| Sbjct 1695282 GTTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTGCC 1695224 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||||||||||||||| || |||||| ||| Sbjct 1695223 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 1695164 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | |||| || ||||| ||||| || Sbjct 1695163 GACGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCAGTCAGGGT 1695104 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1695103 CTTGACAAAGATCTGCAT 1695086 >seq27 Length=10010218 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || || ||| | || |||||||||||||| Sbjct 3544826 GTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCA 3544885 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| |||| ||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 3544886 GCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3544945 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3544946 ACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 3545005 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 3545006 TTGACAAAGATCTGCAT 3545022 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || || ||| | || |||||||||||||| Sbjct 3545054 GTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCA 3545113 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 3545114 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3545173 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 3545174 ACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 3545233 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 3545234 TTCACAAAGATCTGCATG 3545251 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 133475 CTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATGAG 133534 ||| || ||||| ||| || ||| | ||| || |||||||| || || | || || Sbjct 3544609 CTGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAG 3544668 Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||| || || ||||||||||| || |||||| ||| | | ||||| Sbjct 3544669 CCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAAT 3544728 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| |||| ||||| || | |||| ||| ||||| ||||| || || ||||| || Sbjct 3544729 GGTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGAT 3544788 Query 133655 CTGCAT 133660 |||||| Sbjct 3544789 CTGCAT 3544794 >seq32 Length=7345140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||||||| | | ||| || |||||| || ||||| || ||||| ||||| || || Sbjct 6867112 GCCCTCGTAGGTGTGGTAGGGGCCGTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 6867171 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 ||||||||||| |||||| || ||| |||||| || ||| |||| ||| | Sbjct 6867172 CCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGTGCCTCGGCGCTCTCGAA 6867231 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | | || | | || ||||| || |||||||| ||||| | ||| ||||| || Sbjct 6867232 GGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGGGCG 6867291 Query 148679 GTG 148681 ||| Sbjct 6867292 GTG 6867294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483388132839440