Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 seq11 107 2e-18 >seq4 Length=50704236 Score = 150 bits (166), Expect = 2e-31 Identities = 462/703 (66%), Gaps = 15/703 (2%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || ||||||| |||| | || | |||| Sbjct 15647213 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 15647154 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 15647153 TTCTCATAGTTTTCTCTAGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 15647094 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 15647093 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 15647034 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || ||||| ||||||| | | || |||| | ||| | || ||||| | | | Sbjct 15647033 TTGCAGGAGGAGATAGTTG--GAATCAAGTTTTTATCATTGACGTAGTCTCCGAAGGCTT 15646976 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| || || || |||| ||| || ||||| ||| || || || || || Sbjct 15646975 GTCCGTAGGTGTGGATTTCAATGTATTTGCTAAGCTCGTTGTAATA-CTTGACTCGAGCG 15646917 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || ||| |||||| || || || |||||||| || || || ||| || | || || Sbjct 15646916 TGCTCGGGGTTCCAGTTACTCACAACCCAGCAGACCAAGTT-CTCCTTACTTGGTAC--- 15646861 Query 177302 ATTCGATACT-AATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | | || | | | | | | | | | || || ||||| || ||||| | Sbjct 15646860 -TTCAAACGTGAAGGAACTCGTACCAACCATCATGAAGCCGTAAGGCACCTGGATATCTG 15646802 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGG 177419 |||| || | ||| || | || || || ||||||| ||| || || | ||| || | Sbjct 15646801 AGTCACGCCGGTAAGTCAGGGTCAGGTTAAAAAGGTGTTCAATGCCACTCTTTTGTGGAG 15646742 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 15646741 -TGTGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGC 15646683 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| || || |||||||| |||| || || |||| || | Sbjct 15646682 TGAGGTAAATTAGCCAGATCCCAGCTAATGTCTCTGTGATGAATGAGAACAGCATGGGAT 15646623 Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599 ||| ||| | || | ||| | || | || ||| || | || || || ||| Sbjct 15646622 CTGTTATATAGCGAGCGGTCAATAGTCAGATGGCACCCAGGGATATTGAACATGGTTTGG 15646563 Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | ||||||| |||| || || | |||||| ||||| Sbjct 15646562 CAGGATGTTAGATCGAATGTCTGACCAAATGGCCACACCCAGA 15646520 >seq11 Length=20308778 Score = 107 bits (118), Expect = 2e-18 Identities = 240/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || || ||||| ||||||||| | ||| |||||||||||||| || || | ||| Sbjct 4855097 CGGACTATCTCGCCATTGGTCTTGATGGGGAAGTCGGTGCCGCAAGTGTTGATGAGGTAT 4855156 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||| ||| | || | | ||| ||||| | ||||| || |||||||| | || Sbjct 4855157 CGCCACGGCACGGGGC-TCTGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCG 4855215 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| | || || || |||||||||| | |||| || ||||| ||| ||| || Sbjct 4855216 GGACCAGGCGGCATAGACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCA 4855275 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | | || || ||||||| ||| | | || | ||| || || || || Sbjct 4855276 GGCAGCAATGGCCCGCACGGCCTCCTGGAAGGCGGCCGGG--GATTTGCTGTCCACATGG 4855333 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 || ||||| | |||||| |||| ||||| || || ||| | | ||| ||||| || || Sbjct 4855334 ACACAGTAGACATTCTGGGGGGAGTAGACGGACCGCAGGAGCCGCTCAAACATGTCGATT 4855393 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || | ||| | || || || || || ||||||||||| |||||| | ||||| Sbjct 4855394 TTGTTGTGGATGACCATGGAGTAGGCGATGGGGAACTCCTTCTCCTCCTGGCTGAG 4855449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578392912457600