Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq27 87.8 4e-12 >seq27 Length=10010218 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| ||||||| || |||| Sbjct 3545019 CAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGTGAC 3544960 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || ||||| ||| || ||| || Sbjct 3544959 ACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCAGCAG 3544900 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || ||||| || |||||| | |||||||| | || || | || |||||| | Sbjct 3544899 AGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAACATT 3544840 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || ||||||||||| || Sbjct 3544839 CAGAAGGAATCCACTCTTCACCTGGT 3544814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181738941920926