Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 3e-15 seq27 93.3 4e-14 seq21 87.8 2e-12 >seq32 Length=7345140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| ||||||||||||||| || ||| |||| || ||||| | Sbjct 6868869 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 6868928 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 |||| |||| ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 6868929 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 6868981 >seq27 Length=10010218 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| || ||| ||| |||||||||||| || || | Sbjct 3544829 GATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCG 3544888 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| || |||||||| |||||||| ||||| || || |||| Sbjct 3544889 AAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 3544948 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | ||||| ||||| | || | || || |||||||| || || Sbjct 3544949 TTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 3545008 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 3545009 ACAAAGATCTGCAT 3545022 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| || ||| ||| |||||||||||| || || | | Sbjct 3545057 GATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCA 3545116 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || |||||||| ||||| || || |||| Sbjct 3545117 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 3545176 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| || || Sbjct 3545177 TTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 3545236 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 3545237 ACAAAGATCTGCATG 3545251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 131939 TGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGA 131998 ||||||||||||||| || ||| ||| ||||| ||||| || || | | |||| || Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 131999 CGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACA 132058 | ||| || ||||| || |||||||| ||||| || || |||| | || | Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATG 3544729 Query 132059 GTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATC 132118 || || | || ||||| || | || | || || |||||||| || || | ||| ||| Sbjct 3544730 GTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 3544789 Query 132119 TGCAT 132123 ||||| Sbjct 3544790 TGCAT 3544794 >seq21 Length=13582449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || |||||||||||||| || |||||| |||||| ||||| || || | Sbjct 1695281 TTGACTCCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAG 1695222 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | ||| || || ||||| |||||||| ||||| || || || | Sbjct 1695221 CAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA 1695162 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||| ||||| | || | || || |||||||| || | Sbjct 1695161 CGTTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCT 1695102 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 1695101 TGACAAAGATCTGCAT 1695086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578992998160