Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-23 seq92 98.7 3e-17 seq21 98.7 3e-17 seq1 98.7 3e-17 seq6 87.8 6e-14 seq29 86.0 2e-13 >seq2 Length=63311091 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 830136 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 830077 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 830076 CCCGGGCTTCAGC 830064 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 830845 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 830786 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 830785 CCCGGGCTTCAGC 830773 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 818562 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 818621 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 818622 CCGGGCTTCAGC 818633 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct 814049 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGGTCAAT 814108 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 814109 CCCGGGCTTCAGC 814121 Score = 91.5 bits (100), Expect = 5e-15 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||| | Sbjct 51396195 GCCGAAATAGCTCAGTTGTGAGAGCGTTAGATTGAAGATCTAAAGGTCCCTGGTTCAATC 51396136 Query 2829 CCGGGCTTCA 2838 ||| | |||| Sbjct 51396135 CCGAGTTTCA 51396126 >seq92 Length=1905638 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 337024 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 337083 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 337084 CCGGGTTTCGGC 337095 >seq21 Length=13582449 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1691040 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1691099 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1691100 CCGGGTTTCGGC 1691111 >seq1 Length=77483305 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 44100779 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 44100720 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 44100719 CCGGGTTTCGGC 44100708 Score = 82.4 bits (90), Expect = 2e-12 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| | | Sbjct 22192878 GCCGAAAAAGCTCAGTTGGGAGAGCGTTAGATTGAAGATCTAAAGGTCCCTGGTTTGATC 22192937 Query 2829 CCGGGCTTCA 2838 ||| | |||| Sbjct 22192938 CCGAGTTTCA 22192947 >seq6 Length=32995986 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| ||||||||||||||||||||||||||||| | |||| Sbjct 20780348 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTAGATCCCGA 20780289 Query 2833 GCTTCAGC 2840 | ||| || Sbjct 20780288 GTTTCGGC 20780281 >seq29 Length=9690256 Score = 86.0 bits (94), Expect = 2e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 9495969 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGCTCGATC 9495910 Query 2829 CC 2830 || Sbjct 9495909 CC 9495908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848662842870