Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq93 84.2 3e-11 >seq93 Length=1890510 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/289 (66%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | || || || || || ||| | || || ||| Sbjct 1179712 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTATGGGGACATTGATGCCATGGAGCTGTAC 1179653 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | || Sbjct 1179652 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAA 1179593 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 |||||| || |||||||||| ||| || || || | |||||||||||| | ||| Sbjct 1179592 ATGGGGGCACCATTCTCCCTGAAGGGGCTGATGGGCAATGCCATCTGCTCCCCTGAGTAC 1179533 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | || ||||||| | | || |||| Sbjct 1179532 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTTGACATCGTCAACACAGCCTCCCTG 1179473 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| || || ||||| || | || |||| Sbjct 1179472 CAGAAGCTCATCTGCAACAACGTGAAAGGCTGTCCCTTCACTGCCTTCC 1179424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723291920245440