Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq12 109 4e-19 >seq2 Length=63311091 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 46426577 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 46426636 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || |||||||||||||| || || ||||| || || | Sbjct 46426637 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCCTTTAATATTGCCA 46426696 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | ||||||||||| |||||||| || || || Sbjct 46426697 GCTATTCACTGCTCACGTACATGATTGCCCATGTCAC 46426733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 19108364 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 19108423 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || ||||||||||| ||||| || || ||||| | || || | ||| Sbjct 19108424 CTGAAGAAGAGGGGCTTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 19108483 Query 44255 GA 44256 || Sbjct 19108484 GA 19108485 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||||||| ||| || ||| |||| || || ||| Sbjct 19105699 CCAGAAGCTCGTTGTTTCTATGGCTTTCAAATTCTCATTGAGAATGTTCACTCAGAGATG 19105758 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 19105759 TACAGCTTGCTCATAGACACCTACATCAAAGAT 19105791 >seq12 Length=17335395 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||||||||| || || |||||||| |||||| Sbjct 8987134 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTTTATGGCTTCCAGATTGCCATGGAAAAT 8987075 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| || ||| Sbjct 8987074 ATACATTCAGAAATGTACAGTCTCCTTATTGACACCTACATTAAGGAT 8987027 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||||| ||||||||||| ||||| || || || ||||| Sbjct 8985453 GGAGAACGTGTAGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCTTTTGCA 8985394 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || |||||||| | || ||||| ||||| | Sbjct 8985393 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 8985334 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 8985333 ATCAGTAGAGATGA 8985320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429813363030