Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq27 109 5e-19 >seq27 Length=10010218 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || ||||| |||||||| || | ||||| | Sbjct 3544808 CGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCA 3544867 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| || || ||| |||| || | ||| || || || || | || || ||| Sbjct 3544868 TCTTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTA 3544927 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | |||||| ||| || ||||| || || || Sbjct 3544928 TCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATG 3544987 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || || |||||||| ||||| Sbjct 3544988 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3545022 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || |||| |||| || | || || || || ||||| |||||||| | Sbjct 3545024 CCTCCCCTCAGGCGCAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGAC 3545083 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||||| | ||||||||||| || || || | || || | ||| || || || || Sbjct 3545084 AGGGTGCGCCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3545143 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| |||| | | || | ||||| ||| ||||| Sbjct 3545144 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 3545203 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 3545204 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3545250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424906402931472