Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq21 147 7e-30 seq27 136 1e-26 seq56 104 7e-17 seq48 93.3 1e-13 seq12 84.2 7e-11 seq2 84.2 7e-11 >seq21 Length=13582449 Score = 147 bits (162), Expect = 7e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 ||||||| || | | || ||||| || ||||| ||||| || ||||| || || |||| Sbjct 1695314 TACCACCCCGCAGACGCAGGACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAG 1695255 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || |||||||| || || || ||||||||||| || | ||||| ||||||| Sbjct 1695254 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 1695195 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || ||||| |||||||| || || || || || || ||||| | ||| || || | Sbjct 1695194 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGA 1695135 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || | ||||| || || || || || ||||| |||||||| Sbjct 1695134 CTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 1695086 Score = 140 bits (154), Expect = 1e-27 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || ||||| || ||||| || ||||| || || || || || Sbjct 1694860 CATTCCACCCCGCAGGCGCAGGACAAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1694801 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||||||||| || | ||||| ||||| Sbjct 1694800 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 1694741 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| |||||||| || || || || ||||| || || | ||| || || Sbjct 1694740 AGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 1694681 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || | ||||| || || || || || || || ||||||||| Sbjct 1694680 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATT 1694629 >seq27 Length=10010218 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| || || || ||||| || || || || | || ||||||||| Sbjct 3544811 AGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCT 3544870 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| || || || | ||||| || |||||||| ||||| |||||| Sbjct 3544871 TCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTATCC 3544930 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || ||||| || || | ||| Sbjct 3544931 TGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 3544990 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || ||||| ||||||||| Sbjct 3544991 TTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 3545023 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| || || || ||||| || || || || | || ||||||||| Sbjct 3545039 AGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGCCCATCT 3545098 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || ||||| ||||| |||||| Sbjct 3545099 TCGAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 3545158 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || ||||| ||||| || | ||| Sbjct 3545159 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 3545218 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 3545219 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3545250 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 140553 TGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGA 140612 ||||| || || || || | || ||||| ||||| || || || ||||||||||| || Sbjct 3544610 TGAATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGC 3544669 Query 140613 CGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATC 140672 | ||||| || || ||||| ||||| |||||||| || || || || || || ||||| Sbjct 3544670 CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATG 3544729 Query 140673 GAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATC 140732 | ||| ||||| || ||||| || | ||||| || || || || || || || ||| Sbjct 3544730 GTGTCACTGGGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATC 3544789 Query 140733 TGCAT 140737 ||||| Sbjct 3544790 TGCAT 3544794 >seq56 Length=3924218 Score = 104 bits (114), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || || || ||| Sbjct 828840 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTT 828896 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 828897 GTATTTGACCTGGGCGGTGGGACTTTTGATGTGTCCCTCCTTACAATTGACAACGGAGTC 828956 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| |||||| || || || ||||||||||| ||||| Sbjct 828957 TTTGAAGTTGTGGCGACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 829009 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || |||||||| ||||| || ||||| |||||||||||||| |||||| | Sbjct 829710 CAGCCTGGACAGCTGCCCCATAGGCCACAGCCTCATCTGGGTTAATGCCACGAGAAGGCT 829651 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| || || ||| || | || || ||||| || || | |||||| |||| Sbjct 829650 CCTTCCCATTGAAGAACTCTTTAACGAGCTGCTGGATTTTGGGGATGCGAGTTGATCCAC 829591 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | ||||||| | |||||| | Sbjct 829590 CAACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCT 829531 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 829530 GAACAGGCTTCATAGT 829515 >seq48 Length=4916287 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| || || ||||||| ||||| ||||||| Sbjct 3713850 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACGAAAGATG 3713909 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||||| ||| | || || || |||| || || || ||||| || || || | Sbjct 3713910 CTGGAACTATTGCAGGGCTCAACGTGCTGCGAATCATCAACGAGCCCACAGCAGCTGCCA 3713969 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| |||||||| || || Sbjct 3713970 TTGCCTATGGGCTGGACAA 3713988 >seq12 Length=17335395 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 8985315 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 8985374 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || || || || || ||||| || |||| Sbjct 8985375 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 8985434 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 8985435 AGGCTACTA 8985443 >seq2 Length=63311091 Score = 84.2 bits (92), Expect = 7e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780 |||||||||| | || ||| |||||| || || || ||||||||||| || || ||||| Sbjct 19108487 CCTCATCTCT-GCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTC 19108429 Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840 |||| ||||||||| || ||| | || ||||| || || ||||| || |||||| Sbjct 19108428 TTCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 19108369 Query 223841 GCTAC 223845 || || Sbjct 19108368 GCAAC 19108364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515149446851018