Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq95 102 9e-17 seq32 86.0 7e-12 seq5 86.0 7e-12 >seq95 Length=1820170 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||| || || ||||| || |||||||| Sbjct 820465 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTCCCTCCATGCAGCCTTGTGCCAAACTGA 820524 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||||| ||| | ||||||||||||| |||||| || ||||||||||| || Sbjct 820525 CCAATGGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 820580 >seq32 Length=7345140 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 6871275 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAG 6871216 Query 53390 GAGTGTGCCCACATCTCCAAGT 53411 ||||||||| ||||||||||| Sbjct 6871215 CAGTGTGCCCTCATCTCCAAGT 6871194 >seq5 Length=39211856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | || || || || Sbjct 26246320 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTGCCAAACTGA 26246379 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || |||| ||||| || |||||||| ||||||||||||||| Sbjct 26246380 CCAATAGGTTGTAGCAGATTCACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 26246439 Query 117425 ATCGT 117429 || || Sbjct 26246440 ATAGT 26246444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547179021878800