Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq27 190 2e-43 seq21 176 5e-39 seq32 109 6e-19 >seq27 Length=10010218 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| || || || || || ||| | | Sbjct 3545023 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAG 3544964 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| ||||||| || || ||||| ||||| || |||||||||||||| Sbjct 3544963 TGACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGACCA 3544904 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||| ||||| ||||| ||||| |||| || ||||| ||||||| || Sbjct 3544903 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAA 3544844 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| || || |||| || | ||||| Sbjct 3544843 CATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCTCAGGGGTGG 3544796 Score = 181 bits (200), Expect = 1e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 3545250 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 3545191 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 3545190 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3545131 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| ||||| |||| || ||||| ||||||| || Sbjct 3545130 CAGAGGCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGGCGCACCCTGTCAGACTACAAC 3545071 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || ||||||||||||||||| || || |||| || Sbjct 3545070 ATTCAGAAGGAATCCACTCTTCACCTGGTGCTGCGCCT 3545033 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || ||||||||||| || | || Sbjct 3544794 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGAACCCAGT 3544735 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 3544734 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3544675 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 3544674 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 3544616 >seq21 Length=13582449 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||||||||| ||||| || || ||| | || Sbjct 1695086 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTCGAGCCCAGT 1695145 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| ||||| || || ||||| |||||| Sbjct 1695146 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1695205 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1695206 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1695265 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || || ||| ||||||| || ||||| Sbjct 1695266 ATTCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGTCTGCGGGGTGG 1695312 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || |||||||| ||| | | Sbjct 1694629 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1694688 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 1694689 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1694748 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1694749 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1694808 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||||||||| || || ||| |||| || || |||||| Sbjct 1694809 CATCCAGAAAGAATCCACTCTGCACCTTGTCCTGCGCCTGCGGGGTGGA 1694857 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| || || |||||||| ||| | | Sbjct 1694857 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1694916 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 1694917 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1694976 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||| ||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1694977 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1695036 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || |||| || | ||||| Sbjct 1695037 CATCCAGAAGGAATCTACCCTGCATCTTGTGCTGCGCCTCAGAGGTGG 1695084 >seq32 Length=7345140 Score = 109 bits (120), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACT 80629 ||||||| ||| || | || | ||| ||||| | | | ||||||||||||| | || Sbjct 6867105 CCGGAGAGCCCTCGTAGGTGTGGTAGGGGCCGTGCTCCCTGGCCAGCTCACAGCTGGCCT 6867164 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 || |||||| ||| |||||| ||| |||| | || ||| | | | |||| | Sbjct 6867165 CC---AGGGCCCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGTGCCTCGG 6867221 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 | ||||| | || | ||| | ||||| |||||||||||||||| ||||||||| Sbjct 6867222 CGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGC 6867281 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| |||||||| || ||| || |||||||||| ||| Sbjct 6867282 CGATGGGGCGGTGCCGGCGGTTGGAGCGCTCGGCCTGCGG 6867321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570271861274720