Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq11 318 8e-82 >seq11 Length=20308778 Score = 318 bits (352), Expect = 8e-82 Identities = 682/1004 (68%), Gaps = 24/1004 (2%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||| ||| |||||| |||||| ||| | || | | Sbjct 4855523 CGCCCGGCGAATACCTGAACATTACGAGGGACTGCAGAGCCTTCAAGAAGACCCGGCGCT 4855464 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | ||||| |||| ||| ||| ||||| |||||||||||||| || || | Sbjct 4855463 ACATCGAGTTTCCCCTCAGCCAGGAGGAGAAGGAGTTCCCCATCGCCTACTCCATGGTCA 4855404 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 ||||| |||| ||||| ||||| ||||| |||||| || || ||||| |||| ||||| Sbjct 4855403 TCCACAACAAAATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACTCCCCCCAGAATG 4855344 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 ||||||| ||||| |||||| ||| ||| | || ||| || ||| ||||| Sbjct 4855343 TCTACTGTGTCCATGTGGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCA 4855284 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 | || |||||||| ||||| | ||||| ||| ||| | |||||| || | | Sbjct 4855283 TTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCCG 4855224 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || ||||||||||||||| ||||||| ||||||| |||||| Sbjct 4855223 CCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGC 4855164 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 |||| | ||||| ||||| ||||| | |||||||| |||||||||| |||| Sbjct 4855163 CGTGGCGATACCTCATCAACACTTGCGGCACCGACTTCCCCATCAAGACCAATGGCGAGA 4855104 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC-- 14077 | || ||||||||| || ||| ||| | ||| | ||||| ||| | ||| Sbjct 4855103 TAGTCCGGGCGCTGCAGCTGCTGCAGGGCCATAACAACGTGGAGTCGGAG---AAGCCCT 4855047 Query 14078 CAACC-ACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTG 14135 || || ||||| ||| ||| ||| | | |||| |||| | || | | | Sbjct 4855046 CAGCCGCCAAGCAGCAGCGCTGGCAGTACCA-CCACGAGGTG----GGGGAGACCATCT- 4854993 Query 14136 GTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAAC 14195 || ||| | | ||| || |||||||| | ||| |||||| || |||| | | Sbjct 4854992 CTC-GCACTGCCCAGAAGAAACTGCCGCCGCCCCACAGCTACCCCATGTTCACGGGCAGC 4854934 Query 14196 GCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC 14255 || ||| |||||||| ||||| || ||| | | |||| || || || || ||| Sbjct 4854933 GCGTACAACGCGGTCACACGGGACTTTGTGCAGTACGTCTTCGAGAAC---CCCACGGCA 4854877 Query 14256 C---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACC 14312 | | || | | |||| | |||||| |||||||||||||||||| | ||||||||| Sbjct 4854876 CAAAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCCGACGAGCACGTCTGGGCCACC 4854817 Query 14313 GTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTC 14371 || | | ||| |||| |||||||| | || || || ||||| | | ||| Sbjct 4854816 CTGAACCGCATG-CCGGGCGTGCCGGGGGGCACTCCCCCCAGCGACAAGTTCCAGCTCTC 4854758 Query 14372 GGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAA 14431 ||||||| ||| | | | ||||||||| | ||| |||||||| |||| || Sbjct 4854757 GGACATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATCAGCAA 4854698 Query 14432 AGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTC 14491 || || |||||||| ||| |||| |||| | |||||||||||||| |||| Sbjct 4854697 GGGCGCGGCCTACCCGCCCTGCACCGGCCGCCACCAGCGCGCCATCTGCATCTACGGGGT 4854638 Query 14492 CGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG 14550 ||||||||| ||| || | ||| | | || || || ||||||||||||||| || Sbjct 4854637 GGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCG 4854579 Query 14551 AGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 || |||||| ||| | | ||||| || ||| || ||||| Sbjct 4854578 AGGTGGACGATGCGGCCCTCCAGTGTCTCGAGGAGCACCTGCGC 4854535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658694685698560