Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 seq58 87.8 1e-12 >seq2 Length=63311091 Score = 122 bits (134), Expect = 7e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||||||||| || || |||||||| || |||||||| Sbjct 46426739 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAGGGC 46426680 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || |||||||| ||||| || || || | || || | Sbjct 46426679 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 46426620 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || ||||| || | ||| ||||| ||||| | |||||| ||| Sbjct 46426619 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGG 46426575 Score = 111 bits (122), Expect = 1e-19 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 46423113 CATATCTTTGTATTCTGCTCCAAAATGCCTCCATTGGAAACCATACACTGGTCCCAAATC 46423054 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 46423053 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCAT 46422995 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || || || |||| ||||| |||| ||||| || || || || || | Sbjct 46422994 CCCAAATCTTCACACCTTTTGCAGAAAGCTCCTTGGCATTTGTAGAACC-CT-ACAAAAC 46422937 Query 30402 ACAG 30405 |||| Sbjct 46422936 ACAG 46422933 >seq58 Length=3607375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| || | || || |||||| | | ||| | ||||| || || Sbjct 3019888 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 3019829 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 3019828 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 3019781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406283629985352