Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopodoces_20humilis_20[refseq_20GCF_5F000331425.1_202013-01-11] 5,406 sequences; 1,042,997,632 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 seq58 87.8 1e-12 >seq2 Length=63311091 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||||||| Sbjct 46426739 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAGGGC 46426680 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||||||| ||||| ||||| || | || || | Sbjct 46426679 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 46426620 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || ||||| || | ||||||||| ||||| | ||||| || Sbjct 46426619 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAG 46426576 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 ||||||||||| ||||| || ||||| ||||||| || ||||| || || ||||| ||| Sbjct 46423091 AAATGCCTCCATTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 46423033 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 46423032 ACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 46422973 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 || ||||| |||| ||||| || || || || || ||||| Sbjct 46422972 AGAAAGCTCCTTGGCATTTGTAGAACC-CT-ACAAAACACAG 46422933 >seq58 Length=3607375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| || | || | |||||| | | ||| | ||||| || || Sbjct 3019888 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 3019829 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 3019828 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 3019781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406136439683716